Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0868
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    29   1.8  
Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   2.4  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   2.4  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   2.4  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    27   7.2  

>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 462 LFILSNNMRYFFNLINVCFGLVRQHFNLFSHF 367
           L ILS  M YF  L   C GL+  +F ++SH+
Sbjct: 61  LTILSQPMIYFPILAGHCEGLLASYFGIWSHY 92


>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 480 IFILS-FLFILSNNMRYFFNLINVCFGLVRQHFNLFSHFPMHHNPYLHF 337
           IF LS FLF L N+ RYF N  +  F     H+ + S  P+ +N YL F
Sbjct: 46  IFKLSNFLFELENSTRYFRN--HTTFQFNTSHYFMQSSSPL-YNYYLTF 91


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
           presynaptic activity protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 HYSEDTVPEFVKMRNKVKIWIMM 360
           HY+E  VPE +K   +++ WI+M
Sbjct: 193 HYNEPIVPEVMKEIKEIETWILM 215


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform b protein.
          Length = 1408

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 HYSEDTVPEFVKMRNKVKIWIMM 360
           HY+E  VPE +K   +++ WI+M
Sbjct: 193 HYNEPIVPEVMKEIKEIETWILM 215


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
           defective protein3, isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 292 HYSEDTVPEFVKMRNKVKIWIMM 360
           HY+E  VPE +K   +++ WI+M
Sbjct: 193 HYNEPIVPEVMKEIKEIETWILM 215


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 471 LSFLFILSNNMRYFFNLINVCF 406
           L FLFI SNN  Y+F  IN+ +
Sbjct: 447 LQFLFI-SNNENYYFQTINIIY 467


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 153 IYKYIKLQWILKLENPKNK--QFFFRLNAVSN*TNNKVI 263
           +++ +K Q +L++ENP NK  +   +L  VS    NK+I
Sbjct: 767 LFEMLKAQAVLEVENPMNKINKMTSKLIQVSKNRENKII 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,102,066
Number of Sequences: 27780
Number of extensions: 184486
Number of successful extensions: 417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)