Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0868
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 260 YLVVSSIRNCI*PKKKLFIFWV 195
           YLV +  RNCI P     +FW+
Sbjct: 29  YLVRAFCRNCIHPTVFSVLFWL 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 260 YLVVSSIRNCI*PKKKLFIFWV 195
           YLV +  RNCI P     +FW+
Sbjct: 477 YLVRAFCRNCIHPTVFSVLFWL 498


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 196 TQKINNFFLG*MQFLIE 246
           T K+NN F+G  +FLI+
Sbjct: 90  TDKLNNPFIGMGEFLID 106


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 173 QLNIFVDCSVTYLLQFRCFSHLFLNIFQRL 84
           +L I + C V+YL+   C +   + +FQ L
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVFQLL 445


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 173 QLNIFVDCSVTYLLQFRCFSHLFLNIFQRL 84
           +L I + C V+YL+   C +   + +FQ L
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVFQLL 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,372
Number of Sequences: 438
Number of extensions: 2169
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)