Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0868
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47150.1 68416.m05119 F-box family protein various predicted ...    28   3.8  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    28   3.8  
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont...    27   8.9  

>At3g47150.1 68416.m05119 F-box family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 360

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 176 LQLNIFVDCSVTYLLQFRCFSHLFLNI 96
           LQ+NI +   V  LL+FRC S L+ +I
Sbjct: 16  LQINILLRLPVKSLLRFRCVSKLWCSI 42


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 411 CFGLVRQHFNLF--SHFPMHHNPYLHFISHFNKFW 313
           CF  V +  N F  SH P+  +PY+HF S   K +
Sbjct: 46  CFWCVHKSMNGFRESHCPICRDPYVHFPSVCQKLY 80


>At1g74180.1 68414.m08591 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 951

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 374 LNKLKCCRTKPKQTFIRLKKYLI 442
           L   KCC  K ++  + LKKY+I
Sbjct: 21  LRGYKCCIEKERKALLELKKYMI 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,094,886
Number of Sequences: 28952
Number of extensions: 155422
Number of successful extensions: 302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)