Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0867
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    88   6e-19
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    47   1e-06
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    44   2e-05
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    41   9e-05
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    32   0.044
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    31   0.10 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    30   0.23 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    29   0.41 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    26   3.8  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   8.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   8.8  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    25   8.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.8  

>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 11/121 (9%)
 Frame = +3

Query: 183 VAVSIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTED-----------AARGLD 329
           V  +I+++LKQ +   S+S + +ES+EV  QCI+ +F++  E+           A    +
Sbjct: 6   VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGDRLVAAFEEYE 65

Query: 330 LLQLVRQRLGPPANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAA 509
            L  V +      NK EAE+LK EGN  + A+ Y +AL+ YT+AIEIDP + VYY NRAA
Sbjct: 66  KLHPVEEDSTAHVNKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAA 125

Query: 510 A 512
           A
Sbjct: 126 A 126


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +3

Query: 378 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAA 512
           EA  LKNE N+ +K     +A++ YT+AIE+D  NA+ Y NR+ A
Sbjct: 4   EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLA 48



 Score = 29.1 bits (62), Expect = 0.41
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 414 MKAERYNEALEKYTRAIEIDPRNAVYYCNRAAA 512
           +K+E Y  A+   ++AIE DP  A  Y  RA A
Sbjct: 50  LKSEDYGLAINDASKAIECDPEYAKAYFRRATA 82


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 384 ERLKNEGNELMKAERYNEALEKYTRAIEIDPRN----AVYYCNRA 506
           E  KN+GN+L +   Y +A EKY+ A++IDP N    A  Y NRA
Sbjct: 224 ENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRA 268


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 381 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAA 509
           AE LK +GN     + Y  A++ +T+AI +D RN + Y NR+A
Sbjct: 2   AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSA 44



 Score = 31.9 bits (69), Expect = 0.058
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 378 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAA 512
           +AE  + +GNEL K+  +  A+++YT   +  P +   + NRAAA
Sbjct: 398 KAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAA 442



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAA 512
           A K +A++ K  GNE  K   +  A+E+Y +A   D    + Y N  AA
Sbjct: 260 ALKKKADQEKQIGNENYKKRNFPVAIEQYKKA--WDTYKDITYLNNLAA 306


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +3

Query: 372 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNA 485
           +A   R+ N+  +L + + Y +A++ Y +AI+ DP+NA
Sbjct: 631 QAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNA 668


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = +3

Query: 261 EVGVQCIETAFELTTEDAARGLDLLQLVRQRLGPPANKAEAERLKNEGNELMKAERYNEA 440
           ++G  C + +   T +D A     +Q + + L   A+  +A+     G   +  ++YN+A
Sbjct: 551 QLGWLCHQQSSSFTNQDLA-----IQYLTKSL--EADDTDAQSWYLIGRCYVAQQKYNKA 603

Query: 441 LEKYTRAIEIDPRNAVYYCN 500
            E Y +A+  D RN  ++C+
Sbjct: 604 YEAYQQAVYRDGRNPTFWCS 623



 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 432 NEALEKYTRAIEIDPRN 482
           ++AL+ Y RA E+DP N
Sbjct: 670 SDALDAYQRAAELDPTN 686


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 381 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAA 509
           A  LK  GN+    + Y  A++ YT+AI     + +++ NRAA
Sbjct: 151 AAELKTLGNKAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAA 192


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 381 AERLKNEGNELMKAERYNEALEKYTRAI 464
           A+  +  GNE   ++RY +A E YT+A+
Sbjct: 64  AQNFREHGNECFASKRYKDAEEFYTKAL 91


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 360 PPANKAEA-ERLKNEGNELMKAERYNEALEKYTRAI 464
           P ++ + A E+L  +GN     + Y EA++KY +A+
Sbjct: 24  PSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQAL 59


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 363 AAPVA-DGQAAVSPGLEPHLPSSARKRS 283
           A P A   Q+++SP L   LP+S +KRS
Sbjct: 167 AQPAALSSQSSLSPKLSSVLPTSTQKRS 194


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 150 LKIEMSNEIKIVAVSIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTED 311
           L+I   N +    + I  FLK       L   + E+ ++ +  +E   ELT ED
Sbjct: 123 LEIRSFNVLSEYPILIPIFLKLDCVSTFLELMNHENADITITVLELLIELTDED 176


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 183 VAVSIVNFLKQQLDGDSLSPDSRESV 260
           +AV I N +  Q+DG S +PD ++ +
Sbjct: 283 IAVVITNQVVAQVDGISFNPDPKKPI 308


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 322 AWTYCSLSVSDWGRPLTRLKPNDSRTKATSS*KLSVTTKRLKSTR 456
           A++ C   ++DW R     KP  S    +SS   S T     S++
Sbjct: 339 AFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSSK 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,640
Number of Sequences: 5004
Number of extensions: 30860
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)