Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0864
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   1.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.3  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   9.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   9.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.1  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +2

Query: 323 ENIMSDIETTTPDRWIENEKIMKSKLMKLPNWYQIPLINSNASHNLTDGNLVRFRGMIQD 502
           ENI + + T  P ++  ++  +K  +  LP++Y + +   +  H   DG+ V    ++ D
Sbjct: 209 ENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHVDHETGDGSAVGRAILLDD 268

Query: 503 M 505
           +
Sbjct: 269 V 269


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 548 TTTNEVKVKSGKYRDTAHVSENEKINYSE 634
           TT N   +K+   R+T +  + + INYSE
Sbjct: 850 TTPNAYNIKNSNQRETKYPYQPQAINYSE 878


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 392 SKLMKLPNWYQIPLINSNASHNLTDGNLVRFRGMIQDMHNPE 517
           S++ K   WY+   +  N  +N+ +G L  F  + +D H  E
Sbjct: 402 SEMDKYFQWYEKEFVEENNPNNIPEGILNVFPILSKDSHLQE 443


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 341 IETTTPDRWIENEKIMKS 394
           +ET    RW+ N+K++KS
Sbjct: 845 LETNDGKRWLSNKKVLKS 862


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +2

Query: 359 DRWIENEKIMKSKLMKLPNWYQIPLINSNASHNLTDGNLVRFRGMIQDMH-NPEFYFEKF 535
           D  + N    + ++ K+PN+             L  G L+R +GM+QD +   EF+    
Sbjct: 39  DEEVSNIFATEERIRKIPNYLDCKW------SELKTGQLLRLQGMVQDTNFGHEFFAGAV 92

Query: 536 EVFNTTTNEVKVKSGKYRDTAHVSENE 616
           EV        +       D  H+ E++
Sbjct: 93  EVNENIWRGCRYILDFSEDEMHLDESK 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,575
Number of Sequences: 5004
Number of extensions: 47052
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)