Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0864
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_570| Best HMM Match : No HMM Matches (HMM E-Value=.)                62   3e-10
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)              28   5.5  

>SB_13503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +2

Query: 413 NWYQIPLINSNASHNLTDGNLVRFRGMIQDMHNPEFYFEKFEVFNTTTNEVKVKSGKYRD 592
           N ++IP IN    H L   +LVRFR M+QDM  PE++  ++EV + +T E  + SG YRD
Sbjct: 42  NIHRIPSINDTPLHYLKPNSLVRFRCMVQDMFGPEYFLSQYEVKSKSTGETVLASGLYRD 101

Query: 593 TAHVSENEKINYS 631
               S + +++++
Sbjct: 102 VVDCSGDLEVDFN 114


>SB_570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +2

Query: 413 NWYQIPLINSNASHNLTDGNLVRFRGMIQDMHNPEFYFEKFEVFNTTTNEVKVKSGKYRD 592
           N ++IP IN    H L   +LVRFR M+QDM  PE++  ++EV + +T E  + SG YRD
Sbjct: 42  NIHRIPSINDTPLHYLKPNSLVRFRCMVQDMFGPEYFLSQYEVKSKSTGETVLASGLYRD 101

Query: 593 TAHVSENEKINYS 631
               S + +++++
Sbjct: 102 VVDCSGDLEVDFN 114


>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 397 LALHYFFILNPSIRRRCFDIAHDIFMHD*KIYSLILLSCVMFW 269
           +AL+  F++ P +R+     A  I+      Y +I + CV++W
Sbjct: 298 VALNRLFLVEPLMRQEMGTYADTIWTFGLFFYGIIAIVCVVYW 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,707
Number of Sequences: 59808
Number of extensions: 317866
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)