Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0864
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40550.1 68415.m05003 expressed protein                             38   0.006
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    29   3.4  
At5g59500.1 68418.m07457 expressed protein                             28   6.0  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    28   6.0  
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic...    28   6.0  

>At2g40550.1 68415.m05003 expressed protein
          Length = 589

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +2

Query: 422 QIPLINSNASHNLTDGNLVRFRGMIQDMHNPEFY 523
           Q+P+++S++   +    LVRFRGMIQDM   EFY
Sbjct: 56  QVPILDSSSIKWVQPKTLVRFRGMIQDMLGNEFY 89


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 320 HENIMSDIETTTPDRWIENEKIMKSKLMKLPNWYQIP-LINSNASHNLTDGNLVRFRGMI 496
           + NI  +I TTT     E ++  + ++  +P   Q P  +  +       GN   +   +
Sbjct: 352 NSNIQGNIYTTTSQNLPEQQQ-QQQQVYMIPAQSQAPGTLYQSVMRPTVQGNQGYYPSPV 410

Query: 497 QDMHNPEFYFEK 532
           Q +H+P+ Y E+
Sbjct: 411 QRLHHPDAYMEQ 422


>At5g59500.1 68418.m07457 expressed protein
          Length = 396

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 397 LALHYFFILNPSIRRRCF 344
           LA HYFF  N S+R+R +
Sbjct: 214 LAYHYFFFFNVSVRKRLY 231


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 579 PLLTFTSFVVVLNTSNFSK*NSGLCMSWIMPLNRTKFPSVKLC 451
           P L FTS V   N  N ++  SG C   +   NRT    V LC
Sbjct: 382 PGLGFTSLVYPENPGNSNESFSGTCEELLFNSNRTMEGKVVLC 424


>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
           to metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 342

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 410 PNWYQIPLINSNASHNLTDGNLVRFRGMI 496
           PN+    L+ S  S NL DG+ +R +GMI
Sbjct: 299 PNFTLNSLLASETSTNLADGSRIRSQGMI 327


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,083
Number of Sequences: 28952
Number of extensions: 222032
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)