Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0863
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    30   0.26 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    28   1.1  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    28   1.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   1.8  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   1.8  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    26   4.3  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.3  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   7.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   7.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.9  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = +2

Query: 446 TVKYSKISNWYAEPSSTFSC*AKEVSVDPAIARTLSASETHRSEILMPSWNNAPPKTRLL 625
           +V   K  N+Y+ P+ + S      S+   I R  S+ ET R   L    N+AP  TR  
Sbjct: 94  SVTNMKKENFYSRPNVSSS------SILLTIKRATSSQETKRDRPLPNIRNSAPSATRSH 147

Query: 626 STECLVTSIL 655
           ST C+    L
Sbjct: 148 STPCVAPGYL 157


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
 Frame = -1

Query: 380 TPSVPGKSPTNSMYC--------SP*STLVKSANLPGGMALATIGASMHIPASMKNEGKG 225
           TPS P KS  +S +         +P S    SA +PGG   A I A+  IP S       
Sbjct: 497 TPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGGKKSA-IEAAAPIPTSADTVESK 555

Query: 224 EKFSWLS*RNFKSVGFSTEAPTPRA*MTK 138
                 S     S G +T  PTP +  TK
Sbjct: 556 HAAGSGSATTIPSPGSATTKPTPGSATTK 584


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 172 VENPTDLKFLYESHENFSPL--PSFFILAGMCMEAP 273
           +EN +DL+ LYE+  N  PL  PS+F    +C+  P
Sbjct: 177 IENNSDLETLYENIHNVLPLITPSYFFTL-LCLILP 211


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 272 RSLLTPCRRA-NSLISLMCFTESSTLNSSVTSLAPRESSQPVVTLSI 409
           RS L P R A NSL SL   +  +   SS +S  P  +  P++T ++
Sbjct: 712 RSFLVPSRDARNSLTSLSLHSNVAKNKSSHSSKWPTHTLSPIITTAL 758


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 175 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 348
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 175 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 348
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 523 GGPRNSKNAIGVGNA---PKRNPDAVVEQRTAEDQAALYRMSGDLNPL 657
           G  + +   +G+GNA     R  DA+ +   A D A +  + GD++P+
Sbjct: 94  GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPI 141


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 541 KNAIGVGNAPKRNPDAVVEQRTAEDQAALYRMSGDLNPL 657
           KN+I  G     +P +V++   AED   + R  GD+  L
Sbjct: 108 KNSIDFGTVDMFDPLSVIQSYKAEDLEEISRNIGDIQQL 146


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 100 DSYWTTYDYNAKDLVIYALGVGASVENPTDLKFL 201
           D  W+ + YN K   I  L  GAS+E   D KF+
Sbjct: 454 DPNWSNFLYNGKTKKIELLDFGASIE--YDEKFI 485


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -3

Query: 420 LVQDIDNVTTGCEDSLGAREVTDEFNVLLSVKHISEISEFARRHGVSNDRGLHA 259
           LV+++D V  GC + +   +   +FN+ + V   S  ++ ++ H +  +  L A
Sbjct: 757 LVENLDLVKNGCSNMVKHIQNCHKFNIPVVVAINSYKTDSSKEHEIIREAALQA 810


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 464 FWNISLFTMATALEPLSRISTT*QRVVKTP 375
           F+ +  F    AL+P +R+S T +RV  +P
Sbjct: 280 FFIVVYFIFGYALKPAARVSRTGRRVFSSP 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,684
Number of Sequences: 5004
Number of extensions: 63970
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)