Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0863
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)             156   2e-38
SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)                    29   2.6  
SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              29   2.6  
SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    28   7.9  
SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 28   7.9  
SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)                 28   7.9  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_29569| Best HMM Match : NAM (HMM E-Value=4.8)                       28   7.9  
SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)                 28   7.9  

>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score =  156 bits (378), Expect = 2e-38
 Identities = 83/183 (45%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
 Frame = +1

Query: 124 YNAKDLVIYALGVGASV-ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPG 300
           Y   D+++YALGVG S  E+ + LKFLYE+HE+F+ LP+F I+ G      I    M   
Sbjct: 329 YTHNDVILYALGVGVSFQEDYSHLKFLYENHEDFAALPTFGIILGQGSMMGIAGGEMAGI 388

Query: 301 KFADFTNVLHGEQYIEFVGDFPGTEGVFTTRCYVVDILDKGSSAVAIVN-SEIFQNKQLV 477
           KF D   +LHGEQY+E     P T G  T R  VVD+LDKG  A+ ++N + + + ++ +
Sbjct: 389 KF-DPAKLLHGEQYLEVYKPLP-TSGSITNRAEVVDVLDKGKGALVLLNVTTLDEQEEPI 446

Query: 478 CRTQQHIFVLGQGGFGGPRNSKNAIGVGNAPKRNPDAVVEQRTAEDQAALYRMSGDLNPL 657
           C  Q  I++ G GGFGG R+S     V + P R PDA V+++T   QAALYR+SGD NPL
Sbjct: 447 CFNQFSIYLGGAGGFGGKRSSDKVKPVVSPPSRTPDASVKEKTGLTQAALYRLSGDYNPL 506

Query: 658 HID 666
           H+D
Sbjct: 507 HVD 509


>SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)
          Length = 260

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 145 IYALGVGASVENPTDLK-FLYESHENFSPLPSFFILAGM 258
           IY L     VE     K FLY +H NF  L  +FILAG+
Sbjct: 16  IYCLAWMMFVETDEGYKWFLYINHWNFLALSLYFILAGV 54


>SB_41986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 314 KSANLPGGMALATIGASMHIPASMKNEGKGEK 219
           K++ L G   LATI  ++HI     N+G GE+
Sbjct: 145 KASRLRGNKKLATIPVNLHIQRMRVNDGSGEE 176


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 38/138 (27%), Positives = 55/138 (39%)
 Frame = +2

Query: 203  TRATRISLPYPRSSYWLECAWRPRSLLTPCRRANSLISLMCFTESSTLNSSVTSLAPRES 382
            T A   ++P P S+   E    P +   P       I+    T    L +  T+LAP  +
Sbjct: 1523 TMAPESTVP-PESTVATETTVAPETTAAPESTLAPDITAAPDTTMRPLMAPATTLAPETT 1581

Query: 383  SQPVVTLSISWTRAPAPWPL*TVKYSKISNWYAEPSSTFSC*AKEVSVDPAIARTLSASE 562
            S P  T++   T APA   L     + +    A P +T    A E +V P I  T +   
Sbjct: 1582 SAPETTVAPETTDAPAT-TLAPETTAALETTVA-PETTA---APETTVPPEI--TAATET 1634

Query: 563  THRSEILMPSWNNAPPKT 616
            T   E  +     APP+T
Sbjct: 1635 TAAPETTVGPETTAPPET 1652


>SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 293 RRANSLISLMCFTESSTLNSSVTSLAPRESSQPVVTLSISWTRAPAPW 436
           R+ NS+++L     +S +N S TSL+P E+S     L+I  TR    W
Sbjct: 90  RKNNSVVTL---DSTSVINISSTSLSPEETSVLARGLTIWPTRRKIDW 134


>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 435 HGAGALVQDIDN-VTTGCEDSLGAREVTDEFNVLLSVKHISEISEFARRHGVSNDR 271
           H   A++ D    +  GC +  GA  + D  +    ++   E SE   +HGV NDR
Sbjct: 17  HSPWAILHDFSEPICRGCCNYEGAERIEDIIHYSRLLRKNWEKSERNAQHGVKNDR 72


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +1

Query: 133 KDLVIYALGVGASVENPTDLKFLYESHENFSPLPSF--------FILAGMCMEAPIVANA 288
           K + IYALG+G +++ P DLK +  S +N     SF         I + +C++ P+    
Sbjct: 119 KGVNIYALGIGTNLDLP-DLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPV--GT 175

Query: 289 MPPGKFA 309
           +PP   A
Sbjct: 176 LPPTTLA 182


>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +1

Query: 133 KDLVIYALGVGASVENPTDLKFLYESHENFSPLPSF--------FILAGMCMEAPIVANA 288
           K + IYALG+G +++ P DLK +  S +N     SF         I + +C++ P+    
Sbjct: 418 KGVNIYALGIGTNLDLP-DLKRMASSADNVLTAESFDDLLIVIDEIKSKICLQVPV--GT 474

Query: 289 MPPGKFA 309
           +PP   A
Sbjct: 475 LPPTTLA 481


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 LREPREFLSLTLVLHTGWNVHGGPD 275
           ++ P    SL  V+H G  VHG PD
Sbjct: 1   MQSPLYLFSLLFVVHVGRQVHGAPD 25


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 301 KFADFTNVLHGEQYIEFVGDFPGTEGVFTTRCYVVDILDKGSSAVAIVNSEIFQNK 468
           K  D TNVL  +  ++ V +   TEG +   CY ++++ +G +   ++     +N+
Sbjct: 496 KDGDVTNVLANQSRLDVVVEGKQTEGKY--ECYSLNLIGQGVAETNLIVKNHLENR 549


>SB_26627| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 155

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 197 SFTRATRISLPYPRSSYWLECAWRPRS 277
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


>SB_55922| Best HMM Match : SAM_1 (HMM E-Value=2.4e-13)
          Length = 255

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 197 SFTRATRISLPYPRSSYWLECAWRPRS 277
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +2

Query: 350  SSVTSLAPRESSQPVVTLSISWTRAP----APWPL*TVKYSKISNWYAEPSSTFSC*AKE 517
            +SVT++AP  +  P +T++   T AP    AP    T + +K       P +T +  +  
Sbjct: 1876 ASVTTMAPESTLAPEITIASESTVAPGTTMAPETTFTPETTKAPETTLPPETTMASESTP 1935

Query: 518  VSVDPAIARTLSASET 565
                     T+ ASET
Sbjct: 1936 APESTLAPETIIASET 1951


>SB_29569| Best HMM Match : NAM (HMM E-Value=4.8)
          Length = 375

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 540 QERYRRRKRTEAKS*CRRGT-THRRRPGCSLQN-VW*P 647
           Q RYRRR R E    C  G    RRR   SL N +W P
Sbjct: 216 QRRYRRRVREEELPNCESGVLLPRRRYAASLWNRLWDP 253


>SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)
          Length = 226

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 197 SFTRATRISLPYPRSSYWLECAWRPRS 277
           S  + TR  LPY +S YW E    PR+
Sbjct: 95  SSKQPTRDPLPYQKSKYWYENPQHPRT 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,881,038
Number of Sequences: 59808
Number of extensions: 522641
Number of successful extensions: 1672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)