Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0863
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.12 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.28 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.28 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.65 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 421 GSSAVAIVNSEIFQNKQLVCRTQQHIFVL 507
           G   VAIV++   +++Q +CR + H F L
Sbjct: 718 GPRGVAIVSASTARSEQFLCRYEAHCFAL 746


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 626 RAAWSSAVRCSTTASGFRFGAFPTPIAFLLLRGPPKPPWPSTKMC 492
           RAA    +  S+ A G RFG         L+ GPP PP P    C
Sbjct: 412 RAASKEDLSPSSLADGARFGGS------CLIHGPPLPPLPLHTEC 450


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 626 RAAWSSAVRCSTTASGFRFGAFPTPIAFLLLRGPPKPPWPSTKMC 492
           RAA    +  S+ A G RFG         L+ GPP PP P    C
Sbjct: 412 RAASKEDLSPSSLADGARFGGS------CLIHGPPLPPLPLHTEC 450


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 501  ENVLLGSAYQLLILEYFTVHNGHGAG 424
            EN+L GS YQ+    Y T +NG G G
Sbjct: 1425 ENLLCGSRYQI----YVTAYNGIGTG 1446


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 518 VSVDPAIARTLSASETHRSEILMPSWNNAPPKTRLLSTE 634
           V VDP  A  ++A+ T     L+P W   P +  L+  +
Sbjct: 462 VQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGVQ 500


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 413 WTRAPAPWPL*TVKYSKISNWY 478
           W +  A W   +  Y +++NWY
Sbjct: 654 WLQVLALWLNHSPNYDQVTNWY 675


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 527 DPAIARTLSASETHRSEILMPS 592
           DP++    SASE   S +L PS
Sbjct: 400 DPSLFVETSASELVESSVLFPS 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,064
Number of Sequences: 438
Number of extensions: 4892
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)