Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0862
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0) 174 4e-44
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 30 1.6
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 29 2.8
SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12) 29 2.8
SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15) 29 2.8
SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_25745| Best HMM Match : Ank (HMM E-Value=0) 28 6.5
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0) 27 8.6
>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
Length = 583
Score = 174 bits (424), Expect = 4e-44
Identities = 86/179 (48%), Positives = 116/179 (64%), Gaps = 16/179 (8%)
Frame = +1
Query: 103 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFVQRLIDNDMAYVSKNGSVYF 282
F + + +E E+ DMA+LNV I+T ++E++ + F++++I N AY S NGSVYF
Sbjct: 183 FAKLTEFWEQEYHKDMAALNVLPADILTNITEYVPEVVTFIEKVIANGYAYES-NGSVYF 241
Query: 283 DTDKFSN-------------YGKLQKMQDS-GEPSDD--EKRNKMDFALWKSHKPEEPYW 414
DT KF + G L + + GE S + EKR++ DFALWK+ KP EP W
Sbjct: 242 DTIKFGSSEKHSYARLVPEAVGDLDALAEGEGELSQNLGEKRSERDFALWKASKPGEPSW 301
Query: 415 DTPWGKGRPGWHIECSAMVSKVFGSQLDIHAGGVDLQFPHHENEEAQSCAYHNIRQWAN 591
++PWGKGRPGWH+ECS M S V GS +DIH GGVDL+FPHH+NE AQS A+ + QW N
Sbjct: 302 ESPWGKGRPGWHVECSVMASDVLGSNIDIHTGGVDLKFPHHDNELAQSEAHFCVSQWVN 360
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Frame = +1
Query: 259 SKNGSVYFDTD-KFSNYGKLQKMQDSGEPSDDEKRNKMDFALWKSHKPEEPYWDTPWGKG 435
S+N ++ + D + S Y +LQK + E + ++ + + W P +
Sbjct: 465 SRNYQIHHEQDGENSRYAELQKPSEYIE-MESQQASASSMSAWPHPNMPGPSGEKTGSTS 523
Query: 436 RPGWHIECSAMVSKVFGSQLDIHAGGVDLQFPHHENEEAQSCAYH 570
P H + A ++K + G + Q HH E A+H
Sbjct: 524 PPEGHNDRYARLNKPSNGKFSYENPGYEAQGEHHYQELEHPSAHH 568
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 577 VYCGMHMIVPLHSHDEEIVDLLLQHGCLIVIQIL 476
+YC + I P HD +V + + GCL+V+ ++
Sbjct: 498 LYCALD-ITPSKPHDRTLVYMTIVEGCLVVVALV 530
>SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)
Length = 587
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 337 EPSDDEKRNKMDFALWKSHKPEEP-YWDTPWGKGRPGWHIECSAMVSKVFGSQLD 498
E SD E A + SH+ + P Y D P+ RP W + +S +F D
Sbjct: 7 EASDTEDATMRLDATYNSHREQVPLYPDEPYNLPRPRWCTRKAGQLSDLFDCHSD 61
>SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)
Length = 278
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 212 LRNSYRGLLITTWLM*VKTVQYILIPI--NSQTMANYKKC 325
LRNSY+ +L+ TW V + Y L+P+ ++ + Y KC
Sbjct: 101 LRNSYKPVLVITW---VFAILYSLLPLAWDANVASIYHKC 137
>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 190 VSEHINSIEKFVQRLIDNDMAYVSKNGSVYFDTDKFSNYGKLQKMQDSGEP 342
+S+ +N ++ FV+ +D + + +FD + F Y + +D EP
Sbjct: 51 LSDDLNKVDSFVESSVDLSNHAAQNDYNEHFDHNGFETYHSEDEDEDGSEP 101
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 287 PINSQTMANYKKCKTV--VNH--QMMKKEIKWTLLFGKVTSPRNPIGIPPGVK 433
P N T N K C ++H Q K+E K+ GK + +NP G+ G+K
Sbjct: 244 PNNPGTYLNRKSCSESQQIHHLPQQAKRE-KFPERHGKAGNKKNPTGVKAGIK 295
>SB_25745| Best HMM Match : Ank (HMM E-Value=0)
Length = 320
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 544 HSHDEEIVDLLLQHGCLIVIQ 482
H H E +VDLLLQHG I +Q
Sbjct: 53 HGH-ERVVDLLLQHGAEINLQ 72
>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
Length = 446
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +2
Query: 260 VKTVQYILIPINSQTMANYKK--CKTVVNHQMMKKEIKWTLLFGKVTSPRNPIGIPPGVK 433
+ V Y+L IN C T MKK +KW L + +PR P+ P G+K
Sbjct: 343 ISDVSYLLNKINVVIYQGQLDMICDTNGAENWMKK-LKWNGLDDFLNTPRQPLYPPSGLK 401
Query: 434 ADLAG 448
G
Sbjct: 402 TKQTG 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,280
Number of Sequences: 59808
Number of extensions: 432642
Number of successful extensions: 1232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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