Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0862
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 168 2e-42
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 168 2e-42
AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical... 29 2.5
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 27 7.6
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z68220-2|CAA92485.1| 234|Caenorhabditis elegans Hypothetical pr... 27 7.6
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 27 7.6
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 168 bits (409), Expect = 2e-42
Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 24/187 (12%)
Frame = +1
Query: 103 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFVQRLIDNDMAYVSKNGSVYF 282
F ++AK YE EF DMA LNV ++TRVSE++ + +V+++I N AY +++GSVYF
Sbjct: 368 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYF 427
Query: 283 DTDKFSN-------------YGK-----LQKMQDS-GE--PSDDE---KRNKMDFALWKS 390
DT F YG+ L+ M++S GE SDD KR+ DFALWKS
Sbjct: 428 DTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKS 487
Query: 391 HKPEEPYWDTPWGKGRPGWHIECSAMVSKVFGSQLDIHAGGVDLQFPHHENEEAQSCAYH 570
K EP+W + WG GRPGWHIECS M S + GS+LDIHAGG DL+FPHH+NE AQ A++
Sbjct: 488 SKDGEPFWPSEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHY 547
Query: 571 NIRQWAN 591
+ W N
Sbjct: 548 DDPHWVN 554
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 168 bits (409), Expect = 2e-42
Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 24/187 (12%)
Frame = +1
Query: 103 FTNIAKQYEHEFWLDMASLNVAKPLIITRVSEHINSIEKFVQRLIDNDMAYVSKNGSVYF 282
F ++AK YE EF DMA LNV ++TRVSE++ + +V+++I N AY +++GSVYF
Sbjct: 367 FDDLAKTYEKEFLADMARLNVLPVDVLTRVSEYVPEVITYVKKIISNGYAYAAEDGSVYF 426
Query: 283 DTDKFSN-------------YGK-----LQKMQDS-GE--PSDDE---KRNKMDFALWKS 390
DT F YG+ L+ M++S GE SDD KR+ DFALWKS
Sbjct: 427 DTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNMKESEGELSMSDDRLKSKRSPNDFALWKS 486
Query: 391 HKPEEPYWDTPWGKGRPGWHIECSAMVSKVFGSQLDIHAGGVDLQFPHHENEEAQSCAYH 570
K EP+W + WG GRPGWHIECS M S + GS+LDIHAGG DL+FPHH+NE AQ A++
Sbjct: 487 SKDGEPFWPSEWGNGRPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEAHY 546
Query: 571 NIRQWAN 591
+ W N
Sbjct: 547 DDPHWVN 553
>AF077541-12|AAY55886.1| 207|Caenorhabditis elegans Hypothetical
protein Y23H5A.8 protein.
Length = 207
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 124 YEHEFWLDMASLNVAKPLIITRVS 195
YE EF DMA LNV ++TRVS
Sbjct: 56 YEKEFLADMARLNVLPVDVLTRVS 79
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 161 FNDAISSQNSCSYC-----LAIFVKCVLLSRPFLMILSSISVIPIAETIFILKNDLS 6
F D S Q C C L + C+ PF++ S ++P+ E F ++ND+S
Sbjct: 1007 FTDVESMQPMCYRCGLNNPLLGGMSCIHCETPFIISFVSFDILPLIE--FKIENDIS 1061
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 325 QDSGEPSDDEKRNKMDFAL--WKSHKPEEPYWD 417
+ SGE SD E K +FA+ ++ H P P+ D
Sbjct: 4301 ETSGETSDSEHDEKREFAIVEFEPHAPTSPHED 4333
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 325 QDSGEPSDDEKRNKMDFAL--WKSHKPEEPYWD 417
+ SGE SD E K +FA+ ++ H P P+ D
Sbjct: 4301 ETSGETSDSEHDEKREFAIVEFEPHAPTSPHED 4333
>Z68220-2|CAA92485.1| 234|Caenorhabditis elegans Hypothetical
protein T20D3.2 protein.
Length = 234
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 249 HVVINKPLYEFLNTINVFRYPRYDEWLC 166
+ ++NKP +F NT + R R EW+C
Sbjct: 117 YTLLNKPQPDFSNTFDYVRTFRGLEWMC 144
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -1
Query: 161 FNDAISSQNSCSYC-----LAIFVKCVLLSRPFLMILSSISVIPIAETIFILKNDLS 6
F D S Q C C L + C+ PF++ S ++P+ E F ++ND+S
Sbjct: 1007 FTDVESMQPMCYRCGLNNPLLGGMSCIHCETPFIISFVSFDILPLIE--FKIENDIS 1061
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,506
Number of Sequences: 27780
Number of extensions: 339200
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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