Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0860
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    47   2e-06
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.70 
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   1.6  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   2.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   2.8  
SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit L2...    26   3.7  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    26   5.0  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   8.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.7  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   8.7  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
 Frame = +3

Query: 168 VNCWFCNSNFWVKFIERNSWTCPKCEQYNGFTEDG---DYNKPIVNNVEETPKTPKVFQR 338
           V C++CN          ++WTC  CE  N   E G   DY  P     ++    P    R
Sbjct: 27  VTCFYCNKKKEKIRDGTSTWTCSICEATNHIDEKGDILDYRPP--TPTQDKGVGPFYAIR 84

Query: 339 TLPNNG-----LCKMCNINQQLKVTQLANFVPMNE----KKYDEEIENYRLQLEKAYKL- 488
             P++       C+ C +NQ +    LA+++P +     + Y++ +  Y+  +E+ + + 
Sbjct: 85  DFPSSSSFQSPFCEKCQMNQLIVNRMLADYLPDSSHPDYQAYEKALPEYKKSIEEKFPIV 144

Query: 489 CSPCKRVVQMKLN----KEKETLLGSKLSEQRTPEKKQNKI 599
           CS C   VQ +L+    + K  +LG  L  Q++ E+   K+
Sbjct: 145 CSECYDSVQDQLDANDYEAKNQVLGYWL--QKSKEQLNAKV 183


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 297 NVEETPKTPKVFQRTLPNNGLCKMCNINQQLKVTQLANFVPMNEKKYDEEIENYR 461
           N E+   T   + + L N  +C   + N +  ++   + +  NE+K D EI+NY+
Sbjct: 82  NEEKESDTQTRYLKQLIN--ICNSPSKNHETSLSPSKSTIDNNERKLDNEIDNYK 134


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 474 KAYKLCSPCKRVVQMKLNKEKETLLGSKLSEQRTPEKKQNKINE 605
           K Y L + C R+  M+ NK+ +T L  K        + + K N+
Sbjct: 84  KRYPLSTKCARISYMQGNKDTKTALTKKYKSNEDVSRMRKKGNK 127


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 217 RSINFTQKFELQNQQLTRHDNNNRKLYINLNIKVMHIADVI-KISID 80
           R  N+ QKF       +     NRK   NL + V  I +V+ +I +D
Sbjct: 62  RHFNWQQKFSNPKISASARKRRNRKARENLKVNVSSIGEVLPEIDLD 108


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 438 DEEIENYRLQLEKAYKLCSPCKRVVQMKLNKEKETLLGSKLSEQRTPEKKQNKINE 605
           D+  +   L  +KA  LC+ C   +  K  +++  L      +Q   EKK  K+ E
Sbjct: 412 DDHSDTSNLSKDKANTLCAQCSVYLSEKYQQQQSLLQLESNIQQLENEKKAAKLIE 467


>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -1

Query: 172 LTRHDNNNRKLYINLNIKVMHIADVIKISIDSISCIF*YIRH-LFH 38
           L R +N+N +  I   IK++ I+ + +I I  I  +F  IRH +FH
Sbjct: 2   LVRENNSNDRSIIEYVIKILLISGISRIII-LILAMFESIRHIIFH 46


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 192 NFWVKFIERNS-WTCPKCEQYNGFTEDGDYNKPIVNN 299
           N +++F   +S WTC  C   N F +DG +N P+V +
Sbjct: 224 NPFIQFTMASSKWTCNLCGSENSFNDDG-FN-PLVGS 258


>SPAC1952.14c |mrpl25||mitochondrial ribosomal protein subunit
           L25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 420 MNEKKYDEEIENYRLQLEKAYKLCSPCKRVVQMKL 524
           ++E+K DE +EN RL+L ++ K  S  K     KL
Sbjct: 103 ISERKRDEILENRRLKLSESLKKTSKFKNERVCKL 137


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 210 IERNSWTCPKCEQ--YNGFTEDGDYNKPIVNNVEET 311
           I+   W C  C Q  YN F     +++P+  N +ET
Sbjct: 145 IDLKYWYC-SCSQFSYNAFNSSRSFDEPMPKNEQET 179


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 169 TRHDNNNRKLYINLNIKVMH 110
           T+HDNN   L +N   K++H
Sbjct: 59  TKHDNNTNNLMVNAYWKLIH 78


>SPBC19F8.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +3

Query: 243 EQYNGFTEDGDYNKP-IVNNVEETPKTPKVFQRTLPNNGLCKMCNINQQLKVTQLANFVP 419
           + ++   E  + N P I  +V   P              +CK  N+++ + V QLA    
Sbjct: 78  KNHSAAMEGVNINVPGIYRDVYPLPNEDVEMHEAKKKENICKKENLSKTVLVRQLAEIYF 137

Query: 420 MNEKKYDEEIENYRLQLEKAYK 485
            N  KY  +       +++A+K
Sbjct: 138 ANSNKYVVDENGLDDLIQQAFK 159


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 FCNSNFWVKFIERNSWTCPKCE 245
           FC SN    F E  + TCP+CE
Sbjct: 659 FC-SNCMEPFYEHKTSTCPQCE 679


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 386 LLVYVTHFAQAIVR*CPLKYLWGFWSFFNII 294
           L +  TH+ + + R   +   W  W FF +I
Sbjct: 759 LNILQTHYCERLGRALVINIPWAVWGFFKLI 789


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 372 NINQQLKVTQLANFVPMNEKKYDEEIENYRLQLEKAYKLCSPCKRVVQMKLNKEKETL 545
           N +++L+   L +F+P       EE+ +  LQ+ + Y  CS    +     + EK+ L
Sbjct: 224 NYHKRLEAVSL-DFLPPAYNDTAEELADLLLQVAQHYDQCSEALNIYDTLSDAEKKDL 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,723
Number of Sequences: 5004
Number of extensions: 54319
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)