Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0860
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11214| Best HMM Match : zf-AD (HMM E-Value=0.27)                    36   0.034
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      32   0.32 
SB_36467| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=3.1)            31   0.55 
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   30   1.3  
SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   2.9  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)               29   3.9  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               28   6.8  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)                     28   6.8  
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          27   9.0  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 27   9.0  
SB_54393| Best HMM Match : RNA_pol_Rpc34 (HMM E-Value=9.3e-10)         27   9.0  
SB_46360| Best HMM Match : EGF (HMM E-Value=0)                         27   9.0  
SB_28364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          27   9.0  

>SB_11214| Best HMM Match : zf-AD (HMM E-Value=0.27)
          Length = 258

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 306 ETPKTP-KVFQRTLPNNGLCKMCNINQQLKVTQLANFVPMNEKKYDEE--IENYRLQLEK 476
           ++PKT  K        +  C +C IN   K +  A+F  +N  + D +  ++N+ + L  
Sbjct: 20  QSPKTSLKRLSSKRSKDEFCLVCGIN--FKTSGQASFFNVNIAQLDSKKMLQNFLVNLAI 77

Query: 477 AYKLCSPCKRVVQMKLNKEK 536
           + ++C  CKR +   + +EK
Sbjct: 78  SRRICKTCKRKIDSLVKREK 97


>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +3

Query: 255 GFTEDGDYNKPIVNNVEETPKTPKVFQR-----TLPNNGLCKMCNINQQLKVTQLANFVP 419
           GF+E  D  +   N + E P +P    R     TL ++     C I++Q  ++  +  VP
Sbjct: 350 GFSESADSKRS--NGISEQPGSPSWKSRLIDALTLLSSSASASCIIDKQSYLSPASPQVP 407

Query: 420 MNEKKYDEEIENYRLQLEKAYKLCSPCKRVVQMK 521
               +  E +ENY L +   ++     KR+ QM+
Sbjct: 408 TIVNQAIEHLENYGLHVLGIFRTGGSKKRMKQMR 441


>SB_36467| Best HMM Match : DNA_ligase_ZBD (HMM E-Value=3.1)
          Length = 77

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 426 EKKYDEEIENYRLQLEKAYKLCSPCKRVVQMKL-NKEKE 539
           ++ + +E E YR  L+  Y LC  C+ V+   L N+EK+
Sbjct: 18  QRDFCDEFEEYRALLDLTYGLCPACESVLNSHLANQEKD 56


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 231 CPKCEQYNGFTEDGDYNKPIVNNVEETPKTPKVFQ---RTLPNNGLCKMCNINQQLKVTQ 401
           CP C+      E   + K  +N +      P  +    R   N G C   +++  L +T+
Sbjct: 415 CPACQHVTRLDESM-FPK-YINELSCAKSNPAAYADSIRCFYNMGKCYQESMSVDL-LTR 471

Query: 402 LANFVPMNEKKYDEE 446
             NF+P+ + KY EE
Sbjct: 472 TGNFIPLGDNKYQEE 486


>SB_16157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/78 (24%), Positives = 31/78 (39%)
 Frame = +3

Query: 360 CKMCNINQQLKVTQLANFVPMNEKKYDEEIENYRLQLEKAYKLCSPCKRVVQMKLNKEKE 539
           C  C +      +Q       +   +  EI N     E  Y   S CK+V    + K ++
Sbjct: 208 CNKCKVQLCFSASQCERMTAPDRCMWQMEIGN---PTEDCYVKASACKKVGDRCMWKNEK 264

Query: 540 TLLGSKLSEQRTPEKKQN 593
           + L  K  +++  EKK N
Sbjct: 265 SALKCKKEKKQKKEKKNN 282


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 226  QLLRSINFT--QKFELQNQQLTRHDNNNRKLYINLNIKVMHIADVIKISIDSIS 71
            +LL+ +N    Q  E+ N   T HD+ NR L  N+ I+   +A + K +  SIS
Sbjct: 1260 RLLQHVNNLEQQSTEIANLTSTAHDHVNRTLRANVTIQERALAAISKAAEASIS 1313


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 273  DYNKPIVNNVEETPKTPKVFQRTLPNNGLCKMCNINQQLKVT----QLANFVPMNEKKYD 440
            D NK + +N        +  Q+  P+  L ++ N++ +L V     +LAN +P+ +K   
Sbjct: 1508 DVNKALGSNGIPCRLLKETAQQIAPS--LTQLYNLSLRLGVVPDKWKLANIIPVYKKGDK 1565

Query: 441  EEIENYR 461
            ++IENYR
Sbjct: 1566 QQIENYR 1572


>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
          Length = 525

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 423 NEKKYDEE--IENYRLQLEKAYKLCSPCKRVVQMKLNKEKETLLGSKLSEQ 569
           N KK D+E  +E +  +  K  ++C PC    + KLN++   + GS+ S +
Sbjct: 443 NLKKLDKEEMVEGFDYKFSKGKEICEPC---TKGKLNRKPFRVQGSRRSAE 490


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
 Frame = +3

Query: 174  CWFCNSNFWVKFIE-------RNSWTCPKCEQ 248
            C  C  NF +K +E       R SWTCPKC++
Sbjct: 1209 CDNCPRNFHLKCLEPPLVKMPRVSWTCPKCKK 1240


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 565 SDNLEPKRVSFSLFN-FICTTLLHGLHNLYAFSN 467
           S N E + V  ++   F C T LHG+H +Y   N
Sbjct: 5   STNPENESVGSTILQTFCCNTTLHGVHRIYNSEN 38


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/43 (20%), Positives = 25/43 (58%)
 Frame = -2

Query: 561 IIWNLRGSLFLYLISFVLLFYMDCIIYMLFLTVTCNSQFLHHI 433
           +IW    SL  ++ S   + Y+  +I++  +++ C+  +++H+
Sbjct: 78  VIWQFHVSLLFHVSSLCHVNYVYHVIWLFHVSLLCHVIYMYHV 120


>SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)
          Length = 569

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 300 VEETPKTPKVFQRTLPNNGLCKMCNINQQLK----VTQLAN-FVPMNEKKYDEEIENYRL 464
           ++E P  P VFQ   P NG  ++ N  +Q K    V Q+ N ++ +N   Y  E + ++L
Sbjct: 132 LQEDPTEPAVFQMVRP-NGANRIANGRRQYKHTTDVYQIRNIYLTVNGLFYGAEYQKFQL 190

Query: 465 QL 470
           ++
Sbjct: 191 RV 192


>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 294 NNVEETPKTPKVFQRTLPNNGLCK 365
           ++VE+TP +PK+F     N G+ K
Sbjct: 414 SSVEDTPGSPKIFPGNTDNTGILK 437


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 232 QVQLLRSINFTQKFELQNQQLTRHDNNNRKLY 137
           Q+  ++ I  T  FE  N  LTR  N+ RK+Y
Sbjct: 45  QLVSVKQITPTSSFEDVNSALTRSGNHRRKIY 76


>SB_54393| Best HMM Match : RNA_pol_Rpc34 (HMM E-Value=9.3e-10)
          Length = 252

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
 Frame = +3

Query: 132 LIYNLRLLLSWRVNCWFCNSNFWVKFIERNSWTCPKCEQYNGFTEDGDYNKPIVNNVEET 311
           +++NL    S     W+ + +F  +F+E  +  C K  +      +  +  P+       
Sbjct: 32  MLFNLEPDESVTGGAWYSDQDFEAEFVEVLNQQCFKYLEQKLRQAEKLHADPVARRNASY 91

Query: 312 PKTPKVFQRTLPNNGLCKMCNINQQL----KVTQLANFVPMNEKKYDEEIENYR 461
                V+ + +   G+ K+ N + +L       ++A+ VP+ +K   +++ENYR
Sbjct: 92  APAEDVW-KYITQLGISKIFNKSIKLGKFPSEWKIAHIVPVYKKDSAQQVENYR 144


>SB_46360| Best HMM Match : EGF (HMM E-Value=0)
          Length = 352

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 583 FSGVLCSDNLEPKRVSFSLFNFICTTLLHGLH 488
           F+G  C  N++    S  L N ICT L++  H
Sbjct: 2   FTGTRCEANIDDCATSPCLNNAICTDLINDFH 33


>SB_28364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +3

Query: 204 KFIERNSWTCPKCEQYNGFTED--GDYNKPIVNNVEETPKTPKVFQRTLPNNGLCKMCNI 377
           KF +  SW+  + ++  GFT      +N  I    E T +  +  QR L +N L    N 
Sbjct: 8   KFSQLKSWSSRELQEIEGFTAQNYSGFNGKIY-ATEPTIQIGRYVQRLL-DNQLQPANNH 65

Query: 378 NQQ-LKVTQLANFVPMNEKKYDEEIE 452
           N + L   ++ANF    EKK   ++E
Sbjct: 66  NDRVLGNIRVANFAGFFEKKKWHDLE 91


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 583 FSGVLCSDNLEPKRVSFSLFNFICTTLLHGLH 488
           F+G  C  N++    S  L N ICT L++  H
Sbjct: 815 FTGTRCEANIDDCATSPCLNNAICTDLINDFH 846


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,963
Number of Sequences: 59808
Number of extensions: 378630
Number of successful extensions: 1105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)