Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0859
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 151 8e-38
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.17
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 29 0.40
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 1.6
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 2.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 2.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.0
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 6.5
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 6.5
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 8.7
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.7
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 8.7
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 151 bits (366), Expect = 8e-38
Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +2
Query: 113 VPPYGERKGWVPRRDEDFADGGAFPEIHVAQYPLGMG-MRGKESTSNALAVQLDESGRVK 289
+PPYG+RKGW P EDF DGGAFPEIHVAQYPL MG R +S N LA+Q+ SG V
Sbjct: 43 IPPYGQRKGWFPSSPEDFGDGGAFPEIHVAQYPLDMGRKRSAKSAGNTLALQVTSSGAVD 102
Query: 290 YSAIARQGHSADKIIYSKLTDLLPSEV-LAEDDPTLQKPDEDDIQDITEKTKLALEKLTN 466
Y+AIARQGH +++ + DL+P L + +L+KP ++ Q++ KTKLAL+K+ +
Sbjct: 103 YNAIARQGHEHGELVQASFRDLIPLRARLGVGEISLEKPSDEQKQEVANKTKLALQKILS 162
Query: 467 AKISXXXXXXXXXXXXXXQ-YIRYTPAQQGGSYNSGAKQRVIRMVEAQ 607
+I+ YIRYTP+ Q G S KQR+I+MV A+
Sbjct: 163 KQIAQSQPKSAVVQQRDDPVYIRYTPSNQMGQALS--KQRIIKMVTAE 208
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 463 GQFLECEFSLLGDILNVVLVWFL 395
G+F++ EFSL G+I N + W+L
Sbjct: 230 GKFIKVEFSLSGEISNAAIEWYL 252
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 29.5 bits (63), Expect = 0.40
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +3
Query: 117 HLTVRGKDGYLEETKILQMAEHSQRSMWHSTRLVWECEARRVLQTLLLSSWMSLGESNIL 296
H+ + G+L TKI +M E++ + + EA+ L++ + + ++ E N++
Sbjct: 503 HIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVM 562
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +2
Query: 362 SEVLAEDDPTLQKPDEDDIQDITEKTKLALEKLTN 466
+E ++D+P + +E++ +DITE++ L K+++
Sbjct: 282 AEETSDDEPLSSEDEENEDEDITEESNLRKRKVSD 316
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 163 IFVSSRYPSFPLTVRWHTGLGHYKSTPDTFSLQLIISIPHLLTRGRQQARQR 8
I +SS P P T++W+ + + P F + I LL R++ R
Sbjct: 212 IQLSSTSPVIPFTLKWNNSCPNPLTNPQEFRVAASAKIQQLLQGNREKFLSR 263
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = -3
Query: 285 TLPDSSSWTARAFEVLSLPRIPIPSGYCATWISGNAPPSAKSSSLRGTHPFLSP*GGTLV 106
++P SSS A + + S IP S + S A S+ SSS + F SP + +
Sbjct: 21 SIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFI 80
Query: 105 WDTTRALPTRLAFNSSSLS 49
+ + + +S+SL+
Sbjct: 81 TSLVSSSSQQSSSSSASLT 99
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 233 KESTSNALAVQLDESGRVKYSAIARQGHSADKIIYSKLTD----LLPSEVLAEDDPTLQK 400
K ++S + +L + SA+ + + ++ KL D L+P+ A DP L +
Sbjct: 34 KHNSSKSFVCELAKIEASLKSALTAELKNIANVLEPKLIDNQYSLIPALPSARTDPLLSQ 93
Query: 401 PDEDDIQDITEKTKL 445
+ +IQ+ TE KL
Sbjct: 94 LNSLNIQNATEDEKL 108
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 202 CHMDLWECSAICKIFVSSRYPSFP-LTVRWHTGLG 101
CH D W A +++V Y ++ L + +HT G
Sbjct: 1099 CHTDPWVSLAALEVYVRRAYRAYSVLEINYHTEAG 1133
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 356 LPSEVLAEDDPTLQKPDEDDIQDITEKTKLALEKLTNAKI 475
L S+++A + T Q PD +++ I+ + + EKL A++
Sbjct: 925 LQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAEL 964
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 243 VLSLPRIPIPSGYCATWISGNAPPSAKSSSLR 148
+LS P+PS ++W +P S ++SS++
Sbjct: 196 ILSAIPSPLPSSSTSSWADEPSPSSTETSSIK 227
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 203 VPHGSLGMLRHLQNLRLFEVPIL 135
V +G M++H+QN F +P++
Sbjct: 764 VKNGCSNMVKHIQNCHKFNIPVV 786
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 111 VCHLTVRGKDGYLEETKILQMAEHSQR 191
+ H+T G DG +EE ++M E +++
Sbjct: 360 ISHITQEGSDGEVEEEGDVEMRESNEK 386
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 341 KLTDLLPSEVLAEDDPTLQKPDEDDIQDITE 433
K D + E+L E+D + DE+D ++ +E
Sbjct: 357 KKYDAIKHEILGEEDDDENEEDEEDSEETSE 387
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = +3
Query: 87 VLL*CPRPVCHLTVRGKDGYLEETKILQMAEHSQRSMWHSTRLVWECEARRVLQTLLLSS 266
V+ C R V + D EET L H W T + W LLL
Sbjct: 457 VMFTCSRKVMRVV---SDSTNEETGQLIRETHDYSLGWTMTIVTWAIWLFLTALNLLLIV 513
Query: 267 WMSLGES 287
W+ +G S
Sbjct: 514 WLGMGVS 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,109
Number of Sequences: 5004
Number of extensions: 58487
Number of successful extensions: 212
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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