Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0859
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.25 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.44 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
 Frame = +2

Query: 110 SVPPYGERKG-WVP-RRDEDFADGGAFPEIHVAQYPLGMGMRGKESTSNALAV-QLDESG 280
           ++  YG  KG  VP ++ ED  D G   +  ++Q+    G   K+      +V Q+ E G
Sbjct: 198 AIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLEDG 257

Query: 281 RVKYSAIARQGHSADKIIYSKLTDLLPSEVLAEDDPTL----QKPDEDDIQDITEKTKLA 448
           ++K +   R  +   K+    +T   P + +      +    Q+PDE+ + D   K   A
Sbjct: 258 KLKPNKKVRISNEMSKVKVIDMTG--PEQRILSGYHAIAGGQQRPDENVVTDKKSKVNFA 315

Query: 449 LEKL 460
           L +L
Sbjct: 316 LPEL 319


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 115 HTGLGHYKSTPDTFSLQL 62
           HTGLGHY   PD   + L
Sbjct: 275 HTGLGHYGHHPDPGEVDL 292


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 303 AIAEYLTLPDSSSWTARAFEVLSLPRIPIPSG 208
           A  E  TLPD   W+++   +LS+  + I  G
Sbjct: 9   AFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG 40


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 303 AIAEYLTLPDSSSWTARAFEVLSLPRIPIPSG 208
           A  E  TLPD   W+++   +LS+  + I  G
Sbjct: 62  AFKEIKTLPDRGMWSSKIEFILSVVGLAIGLG 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 178 SAICKIFVSSRYPSFPLTVRWHTGLG 101
           SAI K  V S    F   + WHT  G
Sbjct: 119 SAILKCVVPSFVADFVKVLSWHTDQG 144


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 219 IPSGYCATWISGN 181
           +P+G    W+SGN
Sbjct: 340 VPNGSVTNWVSGN 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,332
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)