Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0858
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   1.6  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   2.1  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   2.8  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   2.8  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    24   4.9  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    24   6.5  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    24   6.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    23   8.6  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 49  VSPMTVWLIV--RRRRLTFWSSSLPHTRL 129
           VSP   W+I   + R + FWS   PH++L
Sbjct: 520 VSPDGKWIISGSKDRTIQFWSPDSPHSQL 548


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 133 MTEEPRRPTSPGVTAPCLRFASHSVRSDRSFGFLDVHKSS 252
           MT +   P+  G++AP     S + R  R FG L +  +S
Sbjct: 480 MTSKSISPSLSGISAPSASVDSSASRLARDFGSLSLSSNS 519


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 96  LLVKLFASYSTLDDGGATPPN 158
           LL ++F+ Y+TL DG + P N
Sbjct: 160 LLAEIFSLYNTLRDGLSAPSN 180


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -3

Query: 183 AWSCHTGRCWAAWLLRHPKSSMRQRA*PEGQPSPSHYEPDCHWTYAXGGRLD 28
           AW   T   W  W+L    S +       G     H++P  H +YA  G LD
Sbjct: 305 AWGPKTA--WVPWVLGVIYSLVTPIGMAAGLGVREHWDPLAHGSYAAQGVLD 354


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 33  AFHXLRKSNDSLAHSAKEKADLLVK 107
           AFH +  + D++++ + E  D LVK
Sbjct: 210 AFHDVNGNKDAVSNESDEDGDFLVK 234


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 218 LSDRTLCDANLRHGAVTPGDVGRRGSSVIQS 126
           L+D+TL DA L HG +    +G   S +  S
Sbjct: 59  LNDQTLQDAGLTHGQMLYLRLGTPNSDIASS 89


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 93  QPSPSHYEPDCHWTYAXGGRLDL 25
           +P P+     CH+T   GG LDL
Sbjct: 247 RPDPNGSIRSCHFTPPNGGPLDL 269


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 49  VSPMTVWLIVRRRRLTFWSSSLPHT 123
           +SP  ++L  +   L FW  S+P T
Sbjct: 380 ISPDRLYLNKKPEDLNFWKKSVPET 404



 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  DSLAHSAKEKADLLVKL 110
           D  A  +KE+ADLL KL
Sbjct: 473 DQKARKSKERADLLAKL 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,049
Number of Sequences: 5004
Number of extensions: 24255
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)