Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0858
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear recep...    31   0.19 
AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear recep...    31   0.19 
AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear recep...    31   0.19 
AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear recep...    31   0.19 
AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear horm...    31   0.19 
AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear horm...    31   0.19 
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    30   0.33 
Z36719-7|CAN86592.1|  217|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AL023815-5|CAA19428.2|  366|Caenorhabditis elegans Hypothetical ...    26   5.4  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    26   5.4  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    26   5.4  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    26   5.4  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 71  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 130

Query: 183 PEI 191
           P I
Sbjct: 131 PPI 133


>AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 409

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 62  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 121

Query: 183 PEI 191
           P I
Sbjct: 122 PPI 124


>AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 71  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 130

Query: 183 PEI 191
           P I
Sbjct: 131 PPI 133


>AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear receptor
           protein protein.
          Length = 418

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 71  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 130

Query: 183 PEI 191
           P I
Sbjct: 131 PPI 133


>AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform b protein.
          Length = 304

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 71  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 130

Query: 183 PEI 191
           P I
Sbjct: 131 PPI 133


>AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform a protein.
          Length = 418

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   RGQKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           R +K  S G+  + L+++ D + ++ + +         S  + D+G +TPP++S    S 
Sbjct: 71  RFEKCLSVGMDRNALQQNRDPIGYTKRTRRPKKELKTTSDCSSDEGASTPPSVSPLQLSP 130

Query: 183 PEI 191
           P I
Sbjct: 131 PPI 133


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -2

Query: 283 LEPLRGCNLAHSTYGHQENRSSCLTARCVMRISGMELSHREMLGGVAPPSSKVEYEAKSL 104
           L+ L  C  +  ++ H   R  CL    +    G  L H+++   V  PS K ++ A + 
Sbjct: 439 LQDLESCE-SECSWSHIRRREKCLGVNWIPTTRGCMLFHKQIDFNVLQPSFKAQFLANTC 497

Query: 103 T 101
           T
Sbjct: 498 T 498


>Z36719-7|CAN86592.1|  217|Caenorhabditis elegans Hypothetical
           protein C06C3.9 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -3

Query: 267 DAIWPTRLMDIKKTEAPV*PHAV*CESQAWSCHTGRC 157
           D +W T +      + PV      CE  +W C   +C
Sbjct: 152 DLLWKTEICPFSSIDFPVITRKTECEECSWECGIEQC 188


>AL023815-5|CAA19428.2|  366|Caenorhabditis elegans Hypothetical
           protein H28O16.2 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +1

Query: 79  RRRRLTFWSSSLPHT---RLWMTEEPRRPTSPGVTAPCLRFASHSVRSDRSFGFLDVHK 246
           RR+ L     S+  T   R+W   +     +      C+RF  +S+   R F F DV +
Sbjct: 87  RRKILIHMEPSITETNPMRIWTVADDLALLTAVAHVQCIRFIHNSLTFSRKFTFSDVEE 145


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 154 PTSPGVTAPCLRFASHSVR 210
           PT PGV A  ++FA H V+
Sbjct: 413 PTEPGVYAIAIKFADHHVK 431


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 154 PTSPGVTAPCLRFASHSVR 210
           PT PGV A  ++FA H V+
Sbjct: 362 PTEPGVYAIAIKFADHHVK 380


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 154 PTSPGVTAPCLRFASHSVR 210
           PT PGV A  ++FA H V+
Sbjct: 360 PTEPGVYAIAIKFADHHVK 378


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 48  RKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
           +K  D L ++ KEK DL+ KL A  +  D       N +   + M
Sbjct: 482 KKQYDILKNTLKEKEDLIEKLKAQIAAKDQNRQRTQNFNAHSNPM 526


>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +1

Query: 196 SHSVRSDRSFGFLDVHKSSGPDCIPAVVLKTCAP 297
           S S RS R    L +  SS PDC P   L TCAP
Sbjct: 215 SSSTRS-RPGSTLPLSTSSSPDCPP---LTTCAP 244


>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 85  RRLTFWSSSLPHTRLWMTEEPRRPT-SPGVT--APCLRF-ASHSVRSDRSFGFLDVHKSS 252
           + +T   S++ H R  + EE +R   S  VT    CL       +   R+F  +    S 
Sbjct: 31  QEMTLLESAIVHARDSLLEEIQRSKISEDVTQTVDCLLSRVDELLEETRNFAPISPLSSE 90

Query: 253 GPDCIPAVVL 282
            PD +PA++L
Sbjct: 91  APDILPAMIL 100


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 265 CNLAHSTYGHQENRSSCLTARCVMRISGM 179
           C      YGH++++  C T  CV    G+
Sbjct: 910 CGTIGCEYGHKKDKRGCATCDCVDPCEGV 938


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,652,452
Number of Sequences: 27780
Number of extensions: 147005
Number of successful extensions: 392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)