Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0858
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35050.1 68415.m04300 protein kinase family protein contains ... 28 1.6
At5g37010.1 68418.m04438 expressed protein 27 2.2
At5g06480.1 68418.m00726 MD-2-related lipid recognition domain-c... 27 2.2
At3g11780.1 68416.m01445 MD-2-related lipid recognition domain-c... 27 2.2
At1g13000.1 68414.m01509 expressed protein contains Pfam profile... 27 2.2
At1g15620.1 68414.m01877 expressed protein ; expression supporte... 27 3.8
At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi... 26 5.0
At4g40020.1 68417.m05666 hypothetical protein 26 5.0
At2g06040.1 68415.m00661 expressed protein 26 5.0
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 26 6.7
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 26 6.7
At1g60570.1 68414.m06819 kelch repeat-containing F-box family pr... 26 6.7
At1g33020.1 68414.m04066 F-box family protein 26 6.7
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ... 25 8.8
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 25 8.8
At3g45400.1 68416.m04901 exostosin family protein contains Pfam ... 25 8.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 25 8.8
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 304 STQGRMFLEPLRGCNLAHSTYGHQENRSSCLTARCVMRISGMELSHREMLGGVAPPSSKV 125
S + RMFL A H E S + V+ ++GM+LS R G++PP + +
Sbjct: 267 SEKPRMFLFSSSDIEEAQFVMEHAEGDSE---VQYVVAVNGMDLSSRRSSLGLSPPGNNL 323
Query: 124 E 122
+
Sbjct: 324 D 324
>At5g37010.1 68418.m04438 expressed protein
Length = 637
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 9 QKVTSAGLAFHXLRKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSS 179
+ V A + +++ S +A +KADL+ F Y T+ GG++ ++ +SS
Sbjct: 483 EAVADLNSATNQHQRTEVSFTSAAAKKADLMEPSFEKYVTVKRGGSSLDDMEEQESS 539
>At5g06480.1 68418.m00726 MD-2-related lipid recognition
domain-containing protein / ML domain-containing protein
contains Pfam profile PF02221: ML domain
Length = 153
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -2
Query: 238 HQENRSSCLTARCVMRISGMELSHREMLGGVAPPSS 131
H E C C ++ ++H ++L G PP S
Sbjct: 85 HSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGS 120
>At3g11780.1 68416.m01445 MD-2-related lipid recognition
domain-containing protein / ML domain-containing protein
weak similarity to
phosphatidylglycerol/phosphatidylinositol transfer
protein [Aspergillus oryzae] GI:10178615; contains Pfam
profile PF02221: ML domain
Length = 153
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -2
Query: 238 HQENRSSCLTARCVMRISGMELSHREMLGGVAPPSS 131
H E C C + I ++H ++L G PP S
Sbjct: 85 HSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGS 120
>At1g13000.1 68414.m01509 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 401
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 103 SSSLPHTRLWMTEEPR--RPTSPGVTAP 180
SS PH ++W+ PR +PG+ AP
Sbjct: 91 SSDAPHWKIWVPSNPRGAEMLTPGIIAP 118
>At1g15620.1 68414.m01877 expressed protein ; expression supported
by MPSS
Length = 343
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 159 CWAAWLLRHPKSSMR 115
CW W +RHP S +R
Sbjct: 249 CWRFWQIRHPVSHLR 263
>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 697
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 55 PMTVWLIVRRRRLTFWSSSLPH-TRLW-MTEEPRRPTSPGVTAPCLRFASHSVRSDRSFG 228
P + W+++R ++ F+S PH +R++ E R AP R A H V ++
Sbjct: 565 PGSSWVVIRGKKHEFFSGDQPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEE 624
Query: 229 FLDVH 243
L H
Sbjct: 625 MLWYH 629
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 LIVRRRRLTFWSSSLPHTRLWMTEEPRRPTSPGVTAP 180
L+VRR+ L+F T ++P+ PTSP P
Sbjct: 573 LLVRRKSLSFSHKKESSTDSQDKQQPQTPTSPSPPLP 609
>At2g06040.1 68415.m00661 expressed protein
Length = 461
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +1
Query: 136 TEEPRRPTSPGVTAPCLRFASHSVRSDRSFGFLDVHKSSGPDCI 267
T EP SP TAP L + R H+ G DC+
Sbjct: 31 TLEPELHRSPDETAPELGLVDEPTHTTRRRSLRLAHQFDGDDCV 74
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 154 PTSPGVTAPCLRFASHS 204
P PG +AP +F+SHS
Sbjct: 342 PRKPGTSAPVFQFSSHS 358
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 154 PTSPGVTAPCLRFASHS 204
P PG +AP +F+SHS
Sbjct: 342 PRKPGTSAPVFQFSSHS 358
>At1g60570.1 68414.m06819 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 381
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 181 CLRFASHSVRSDRSFGFLDVHKSSG 255
CLRF SH+ RS R F + +KSSG
Sbjct: 78 CLRF-SHTGRSHRWFMLREKNKSSG 101
>At1g33020.1 68414.m04066 F-box family protein
Length = 548
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 60 DSLAHSAKEKADLL-VKLFASYSTLDDGGATPPNISRCDSSMPEIRIT 200
D++AH ++ + F + LDD T S+CD+S + R+T
Sbjct: 446 DTVAHQQRDHHTFKSISKFKAQRLLDDDEFTGVKTSKCDTSHLQNRVT 493
>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 754
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +1
Query: 163 PGVTAPCLRFASHSVRSD-----RSFGFLDVHKS 249
PG+TA C S+++RSD +S G + VH S
Sbjct: 482 PGLTAYCTDLTSYTMRSDHLIFNKSTGSISVHIS 515
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 305 VNSGAHVFRTTAGMQSGPLDLWTSRKPKLL 216
V+ ++ + G Q GPL LW K+L
Sbjct: 145 VHPDTYLNKVLVGSQEGPLQLWNINTKKML 174
>At3g45400.1 68416.m04901 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 475
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 66 LAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSM 182
LAH D KLF + L D G PP ++ + +
Sbjct: 217 LAHHPNSMLDARNKLFPAMFILSDFGRYPPTVANVEKDV 255
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 323 RRVSAGVNSGAHVFRTTAGMQSGPLDLWTS 234
R + GVNS + + G G L LW S
Sbjct: 715 RDLENGVNSESQAYTIATGQADGSLKLWRS 744
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,383,376
Number of Sequences: 28952
Number of extensions: 140814
Number of successful extensions: 420
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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