Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0857
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.6  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   4.6  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.6  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   8.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.0  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 123 EKNSYSQLLLNFPAEIELCGVVKFGETLTTDSTTKEILQDVDITDNP 263
           + ++ + LL     EIEL GV      +    TT+  LQ +D+   P
Sbjct: 11  QDDAITALLAIASPEIELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 285 EKDMKAHFI----VHDKFEETKYEVFSPEELWKQFLH 383
           E D K H I    + D+FEE   + F P + +K+ +H
Sbjct: 59  ESDEKFHPICIDNIPDEFEEIDAKTFDPHQKYKKVIH 95


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  LSKIDTTESTGCLYGLMYDGTLLVVGFSLESFET 116
           +S +DTT + GCL G +Y G   +  F   SF T
Sbjct: 183 ISCLDTTNAVGCL-GTLY-GQYCIFNFKNGSFST 214


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 437 NSSNGSFTSQG*HSVQTYMKELFPQLFRTE 348
           NSS+G   ++G HS+    K   PQLF  E
Sbjct: 408 NSSSGHNDNEGNHSLILSSKTKSPQLFNNE 437


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 390 LNTVLPLRCEATIAGVKNSLQNKRKKIASGQVSFHI 497
           L   +  + +  I+G  NS+  K K++++G+V + I
Sbjct: 234 LQADIEFKVKGFISGTYNSIAGKVKRVSTGEVLYKI 269


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
 Frame = +3

Query: 315 HDKFEETKYEV--FSPEEL 365
           HD+FEET+ E+   SPEEL
Sbjct: 27  HDQFEETEEEIKKRSPEEL 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,678
Number of Sequences: 5004
Number of extensions: 47398
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)