Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0857
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0460 + 19360075-19360320,19361189-19361368                       28   6.2  
09_06_0326 + 22352705-22352764,22352878-22353011,22353160-223532...    27   8.2  
09_03_0169 - 13010909-13012033                                         27   8.2  
06_03_0963 + 26368959-26369462,26370900-26371205                       27   8.2  

>12_02_0460 + 19360075-19360320,19361189-19361368
          Length = 141

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 426 IAGVKNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLT 548
           ++ + N L+   K IASG+ +     T ++L  +A DVG+T
Sbjct: 52  VSFIANKLETIWKGIASGEYTNFSLKTTLFLCSLAEDVGVT 92


>09_06_0326 +
           22352705-22352764,22352878-22353011,22353160-22353228,
           22353978-22354049,22354622-22354694,22354813-22354862,
           22355063-22355135,22355152-22355193
          Length = 190

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 531 TLLQT-NILVYCLYEMTLDLKQSFS 460
           T+LQT N+L Y +Y++T+D   SFS
Sbjct: 133 TMLQTDNLLGYGIYDLTVDTNCSFS 157


>09_03_0169 - 13010909-13012033
          Length = 374

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 225 KEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEV 347
           K ++ D+D+    L+ ++ +E  M  +F+V D+ +E  + V
Sbjct: 107 KALVYDIDLVTGALVEVLPQEPYMLFNFVVSDRDDERLFGV 147


>06_03_0963 + 26368959-26369462,26370900-26371205
          Length = 269

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 396 TVLPLRCEATIAGVKNSLQNKRKKIASGQVSFHIDSTQVYLFG 524
           T L   C++  AGV  +L+N  KKIA+  + F I    VY  G
Sbjct: 210 TALCYDCQSCKAGVLANLKNDWKKIATVNIIFLIFLIIVYSVG 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,257
Number of Sequences: 37544
Number of extensions: 260179
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)