Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0857
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)                29   2.7  
SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)              28   4.8  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)                   28   4.8  
SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2)                 28   6.3  
SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041)               28   6.3  
SB_44326| Best HMM Match : DUF1289 (HMM E-Value=7.5)                   27   8.4  

>SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)
          Length = 286

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +3

Query: 111 ETETEKNSYSQLLLNFPAEI-ELCGVVK--FGETL-TTDSTTKEI---LQDVDITDNPLI 269
           + ET++    Q L     E  ++  +++  F + L TTD   K +   L ++       +
Sbjct: 73  QKETQQQDSEQTLTRLQEERGKVADIIRQEFADRLVTTDEDNKRLKTELSEMRARHRLEL 132

Query: 270 IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLHVRLN 395
             I REK+ +   +   K    +   F  E+LWK   + RLN
Sbjct: 133 ERITREKEEEMEQVHTSKVPSVRKHPFPSEDLWKPMRYFRLN 174


>SB_55999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 423 TIAGVKNSLQNKRKKIASGQVSFHIDSTQVYLF 521
           T  G +N   +  +++ +GQ+SF+ ++TQ++L+
Sbjct: 33  TFHGRRNRRFHVSRRVKNGQISFNENTTQIFLY 65


>SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)
          Length = 112

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 423 TIAGVKNSLQNKRKKIASGQVSFHIDSTQVYLF 521
           T  G +N   +  +++ +GQ+SF+ ++TQ++L+
Sbjct: 28  TFHGRRNRRFHVTRRVKNGQISFNENTTQIFLY 60


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 210 TDSTTKEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEVFSPEE-LW 368
           TD   + ++ ++ I D+P +++     D+K   +  D  +E K   FS ++ LW
Sbjct: 38  TDKNGRYLILEITIEDSPFVLVNYAPNDIKQQQLFFDTVKE-KLRAFSDKQILW 90


>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
          Length = 280

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 15  LSKIDT-TESTGCLYGLMYDGTLLVVGFSLESFET 116
           LSK DT T S   L   MY+ T+L++ FSLE F T
Sbjct: 44  LSKNDTMTTSALRLIRSMYERTILILRFSLELFIT 78


>SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 TDSTTKEILQDVDITDNPLIIIINREK-DMKAHFIVHDK 323
           TD    ++  D D+TD  L   IN  K D++AH + HDK
Sbjct: 151 TDVQAHKVKHDKDVTD--LWAAINNTKTDVQAHKVKHDK 187


>SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041)
          Length = 401

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 77  CTIVHQPIQTSCTLCCVDFRQPLN 6
           CT+V++P +++C LC  D   P N
Sbjct: 365 CTLVNEPGKSTCELCNSDLETPDN 388


>SB_44326| Best HMM Match : DUF1289 (HMM E-Value=7.5)
          Length = 56

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 414 CEATIAGVKNSLQNKRKKIA 473
           C+AT  G K  L N+RKK++
Sbjct: 10  CQATFPGCKRKLSNRRKKMS 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,287
Number of Sequences: 59808
Number of extensions: 330155
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)