Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0857
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 31 0.78
AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical... 28 5.5
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 27 9.6
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 27 9.6
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 27 9.6
>Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical
protein F56H9.1 protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 341 IFRFFKFIMNNKVSFHILLTIYYYN*WVICNIYIL 237
+F FFKF+ K SF+IL T + +++ +Y L
Sbjct: 27 LFMFFKFLSYEKTSFYILCTSKTLSNFILLTVYFL 61
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 30.7 bits (66), Expect = 0.78
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Frame = +3
Query: 60 LMYDGTLLVVGFSLESFETETEKNSY-----SQLLLNFPAEIELCGVVKFGETLTTDSTT 224
L++ GT+ + +LE TEK+ Y S L +F +EI L F L++ T
Sbjct: 1208 LLFGGTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMF--LLSSSFQT 1265
Query: 225 KEILQDVDITDNPLI-------IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLH 383
LQ + + N +I I +REK ++ I+ D FE F LWK +L
Sbjct: 1266 ARSLQFGNSSYNKVIDEKLSLNSIAHREKKVQKFQIISD-FE----NYFGSRGLWKNYLE 1320
Query: 384 VRLNTVL 404
+ +L
Sbjct: 1321 AMICRIL 1327
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 30.7 bits (66), Expect = 0.78
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Frame = +3
Query: 60 LMYDGTLLVVGFSLESFETETEKNSY-----SQLLLNFPAEIELCGVVKFGETLTTDSTT 224
L++ GT+ + +LE TEK+ Y S L +F +EI L F L++ T
Sbjct: 1208 LLFGGTVFIEEKNLEELWKSTEKDVYTCHSLSNLKYHFESEITLNSSFMF--LLSSSFQT 1265
Query: 225 KEILQDVDITDNPLI-------IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLH 383
LQ + + N +I I +REK ++ I+ D FE F LWK +L
Sbjct: 1266 ARSLQFGNSSYNKVIDEKLSLNSIAHREKKVQKFQIISD-FE----NYFGSRGLWKNYLE 1320
Query: 384 VRLNTVL 404
+ +L
Sbjct: 1321 AMICRIL 1327
>AC084197-18|AAM44394.1| 546|Caenorhabditis elegans Hypothetical
protein Y73B6BL.4 protein.
Length = 546
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 132 SYSQLLLNFPAEIELCGV-VKFGETLTTDSTTKEILQDVDITDNPLIIIINREKDMKAHF 308
+Y + L +P E C V V G T+T+ T + D L II + H
Sbjct: 404 AYHEAKLLWPDENVNCVVSVGNGRTVTSVEPTPTVFS-TSFQDKLLRIIDSATDTEGVHM 462
Query: 309 IVHDKFEETKYEVFSP 356
VHD E+ Y F+P
Sbjct: 463 NVHDMLPESVYYRFNP 478
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 213 DSTTKEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFL 380
+ T K +++DV D + E+ +K H+ + ++ ++ KYEV +EL ++ L
Sbjct: 1153 EKTRKVMMEDVHPVD-----VAEAEELLKKHYELGEQIKDKKYEVEYCQELGRRLL 1203
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 213 DSTTKEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFL 380
+ T K +++DV D + E+ +K H+ + ++ ++ KYEV +EL ++ L
Sbjct: 1153 EKTRKVMMEDVHPVD-----VAEAEELLKKHYELGEQIKDKKYEVEYCQELGRRLL 1203
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 408 LRCEATIAGVKNSLQNKRKKIASGQVSFHIDST 506
L CE+ K ++QNK++ S + + H+D T
Sbjct: 33 LTCESCKGFFKRTVQNKKQYQCSAEANCHVDRT 65
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 408 LRCEATIAGVKNSLQNKRKKIASGQVSFHIDST 506
L CE+ K ++QNK++ S + + H+D T
Sbjct: 33 LTCESCKGFFKRTVQNKKQYQCSAEANCHVDRT 65
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 408 LRCEATIAGVKNSLQNKRKKIASGQVSFHIDST 506
L CE+ K ++QNK++ S + + H+D T
Sbjct: 29 LTCESCKGFFKRTVQNKKQYQCSAEANCHVDRT 61
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 213 DSTTKEILQDVDITDNPLIIIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFL 380
+ T K +++DV D + E+ +K H+ + ++ ++ KYEV +EL ++ L
Sbjct: 1153 EKTRKVMMEDVHPVD-----VAEAEELLKKHYELGEQIKDKKYEVEYCQELGRRLL 1203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,542
Number of Sequences: 27780
Number of extensions: 262520
Number of successful extensions: 692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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