Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0857
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   6.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.7  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 76  VPSYISPYKHP 44
           VP ++SPY HP
Sbjct: 75  VPYHMSPYGHP 85


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 SFETETEKNSYSQLLLNFPAEIELCGVVKF 194
           +F  ETE N     +LNF  E ++  +  F
Sbjct: 491 AFSRETEDNGSLYAILNFSNEEQIVDLKAF 520



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 49  HPVLSVVSILDNL 11
           HP+   +S LDNL
Sbjct: 93  HPIFGTISDLDNL 105


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 SFETETEKNSYSQLLLNFPAEIELCGVVKF 194
           +F  ETE N     +LNF  E ++  +  F
Sbjct: 491 AFSRETEDNGSLYAILNFSNEEQIVDLKAF 520



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 49  HPVLSVVSILDNL 11
           HP+   +S LDNL
Sbjct: 93  HPIFGTISDLDNL 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,900
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)