Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0856
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27932| Best HMM Match : Ribosomal_L9_N (HMM E-Value=1.4e-13)        44   7e-05
SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_27932| Best HMM Match : Ribosomal_L9_N (HMM E-Value=1.4e-13)
          Length = 206

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
 Frame = +3

Query: 135 KKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILP-GLAVYANPENLEKYKTYEKRPL 311
           KKP   ++L + ++G+G +G ++ +    A  NF++P   AVYA PEN E++    +   
Sbjct: 39  KKPKFSVILKEPMDGLGNSGQLVEVERGYA-RNFLIPQAKAVYATPENKERFLVSSEDAA 97

Query: 312 EENTHSSPFVKRTMDCLHRLVLRVTMSNSEPWTLQPWHLKASFRKSGFVVPESAIEM 482
           + +  +     R M  L+RL L++          +    +   R+   VVP   IE+
Sbjct: 98  KTDPEAQ-VSSRFMRFLNRLHLKIERKEGNIAVTEHNISQEYQRQHQLVVPTHCIEL 153


>SB_2299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 72  KVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPGL 251
           + PK KGR  ++ LV+D      P   +VL    + V     VL  HL +A+ + +   +
Sbjct: 153 EAPKKKGRFLLFLLVQDHHPVLDPVHALVLGPLKDDVMAVTVVLP-HLAEAHLDPVRGPV 211

Query: 252 AVYANPENLEKYKT 293
            + A+P++ + + T
Sbjct: 212 PLGAHPQDQDPHGT 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,581
Number of Sequences: 59808
Number of extensions: 375827
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)