Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0856
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 462 PESAIEMPPVQIKGPDPNLLDKEFYVTVTIN 554
           P+ A   PP    GPD   LDK F +    N
Sbjct: 339 PKPAPPPPPPSSSGPDSAKLDKIFDIATKEN 369


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 475 IALSGTTKPDLRNEALRCQGCRVHGSELLIVTRS 374
           + LS  T+P   N     Q   VH   L++ T S
Sbjct: 11  LLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTS 44


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 414 QPWHLKASFRKSGFVVPESAIEMPPVQIKGPDPNLLDKEF 533
           Q +H+   F K   V  ++ + +  +  +    NL+DK+F
Sbjct: 9   QHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQF 48


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 475 IALSGTTKPDLRNEALRCQGCRVHGSELLIVTRS 374
           + LS  T+P   N     Q   VH   L++ T S
Sbjct: 11  LLLSSCTRPSRGNAVPSSQRGNVHNDPLVVETTS 44


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -2

Query: 548 CYCNIKFFVE*IWIWALDLHWRHFNSTLRNYEA*LAK*SFEMP 420
           C+ ++KF +E ++   +D+      S L+  +    K   E+P
Sbjct: 82  CFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVP 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,825
Number of Sequences: 438
Number of extensions: 3637
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)