Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0856
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 31 0.55
At1g79120.1 68414.m09226 hypothetical protein 29 2.9
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 28 3.9
At5g22660.1 68418.m02648 F-box family protein contains F-box dom... 28 3.9
At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2) ... 28 5.1
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 28 5.1
At3g04450.1 68416.m00472 myb family transcription factor contain... 27 6.8
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 27 6.8
At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C... 27 9.0
At2g10608.1 68415.m01121 hypothetical protein 27 9.0
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 27 9.0
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -1
Query: 525 CRVNLDLGP*FALEAFQ*HSQELRSLTCEMKL*DARAVESMVQNCSLLHEV 373
CR DLG +E+F + + LR L+C A+ + +M+++C +L E+
Sbjct: 141 CREITDLG----MESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEEL 187
>At1g79120.1 68414.m09226 hypothetical protein
Length = 413
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 57 HKKGGKV--PKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVE 176
HK GG PK K H V+DL + + KKP + + L ++
Sbjct: 48 HKSGGGGWRPKQKVYHRVHDLDKAIDLNKKPSLILQLKSIIQ 89
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 28.3 bits (60), Expect = 3.9
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -3
Query: 316 SSRGRFS*VLYFSKFSGLAYTARPGNMKFSYALFKCSVKTSPVVPTPSTN*FKTILMSGF 137
S+ RF V FS+F+G Y+ + F+ + ++T P + F +I+ S
Sbjct: 3 STYTRFDTVFLFSRFAGAKYSPLLPSPSFTLSTSGIHIRTKP------NSRFHSIIASSS 56
Query: 136 FLTLVSSTKS-*TKCLPFILGTLP-PFL*SGGGHLRRKIKVFL 14
++V+ T S K LP T P +G LR+K+KVF+
Sbjct: 57 SSSVVAGTDSIEIKSLP----TKPIEGQKTGTSGLRKKVKVFM 95
>At5g22660.1 68418.m02648 F-box family protein contains F-box domain
Pfam:PF00646
Length = 315
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 357 CLHRLVLRVTMSNSEPWTLQPWHLKASFRKSGFVVPESAIE 479
CLH+L + M + WT+ PW A R+ + +S I+
Sbjct: 83 CLHKLQISFQMEAVDMWTIIPWIEDAVKRRIQHLEVDSRID 123
>At1g19090.1 68414.m02375 serine/threonine protein kinase (RKF2)
nearly identical to receptor-like serine/threonine
kinase GI:2465925 from [Arabidopsis thaliana]; intron 3
was added to circumvent a frameshift. Either a
sequencing error exists or this may be a pseudogene.
Length = 600
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 430 LRCQGCRVHGSELLIVTRSTNLCKQSIVLFTNGEL*VFSSRGRFS*VLYFSKFSGLAYTA 251
+R GC + G + L+V + +LF + + S + RF+ ++ S+ GL Y
Sbjct: 360 VRLLGCSIEGPKSLLVYEYVHNRSLDQILFMKNTVHILSWKQRFNIIIGISE--GLEYLH 417
Query: 250 RPGNMKFSYALFKCS 206
R +K + K S
Sbjct: 418 RGSEVKIIHRDIKTS 432
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 324 HSSPFVKRTMDCLHRLVLRVTMSNSEPWTLQPWHLKASFRKSGFVVPESAIEMPPVQIK 500
H++ FV R R ++R ++NS+ ++P H +F S V S + MPP +K
Sbjct: 187 HTAQFVARNGQSFLRELMRREVNNSQFQFMKPTHSMFTFFTS-LVDAYSEVLMPPRDLK 244
>At3g04450.1 68416.m00472 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 438
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 243 PGLAVYANPENLEKYKTYEKRP-LEENTHSSPFVKRTMDCLHRLVLRVTMSNSEPWTLQ 416
PGL VY +L+KY+T +P L ++T + +T++ + L L+ ++ +E LQ
Sbjct: 276 PGLTVYHVKSHLQKYRTARYKPELSKDTVKN---LKTIEDIKSLDLKTSIEITEALRLQ 331
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
Frame = +1
Query: 247 VLLCMP---IQKIWKNIKPMKNV 306
V LCMP ++K+W+ I+P++N+
Sbjct: 677 VKLCMPYSKLEKLWEGIQPLRNL 699
>At3g11410.1 68416.m01392 protein phosphatase 2C, putative / PP2C,
putative identical to protein phosphatase 2C (PP2C)
GB:P49598 [Arabidopsis thaliana]; contains Pfam profile
PF00481: Protein phosphatase 2C; identical to cDNA
protein phosphatase 2C GI:633027
Length = 399
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 508 SGPLICTGGISIALSGTTKPDLRNEALRCQ 419
S ++C G++I LS KPD +E +R Q
Sbjct: 242 SRAVLCRNGVAIPLSVDHKPDRPDELIRIQ 271
>At2g10608.1 68415.m01121 hypothetical protein
Length = 135
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 402 PWTLQPWHLKASFRKSGFVV 461
PW PW ++A+F SGF +
Sbjct: 107 PWWGSPWGIEAAFGLSGFAI 126
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 124 VSSTKS*TKCLPFILGTLPPFL*SGGGHLRRKIKVFLVCLL 2
+SS + T+C+ + LP FL + + ++ +F+ CLL
Sbjct: 103 MSSLEKATRCVQQVTSLLPSFLAADDEQSKSRLHLFIGCLL 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,979,704
Number of Sequences: 28952
Number of extensions: 265037
Number of successful extensions: 795
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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