Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0855
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 5e-24
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 62 4e-10
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 57 9e-09
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 46 3e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 44 1e-04
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 43 1e-04
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 42 3e-04
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 41 6e-04
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 41 6e-04
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 40 0.001
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.001
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.001
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.002
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.003
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.010
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.013
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.017
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.023
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 35 0.052
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 35 0.052
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 35 0.052
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.28
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 32 0.37
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 31 0.49
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 0.85
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 31 0.85
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21) 30 1.5
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 30 1.5
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 2.0
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 29 2.0
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 2.0
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 29 2.6
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 28 4.5
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 28 4.5
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 28 4.5
SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06) 28 6.0
SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5) 28 6.0
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 7.9
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 7.9
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 107 bits (258), Expect = 5e-24
Identities = 53/93 (56%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +3
Query: 198 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 374
F ++F G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G
Sbjct: 9 FVENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEG 68
Query: 375 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 473
LSFWRGN AN IRYFPTQALNFAFKD+ K +F
Sbjct: 69 FLSFWRGNLANCIRYFPTQALNFAFKDQVKALF 101
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/99 (19%), Positives = 45/99 (45%)
Frame = +3
Query: 183 ADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIP 362
++ + F+K+ +GG + A+S V ++ + L + ++++ G++D + +
Sbjct: 108 SNAIKFSKNIASGGAAGAMSLFFVYSLDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTI 167
Query: 363 KEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 479
GL+ +RG + + + F D K + LG
Sbjct: 168 ASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG 206
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +3
Query: 324 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 476
+YKG +D ++I K++G +S +G AN++R + F DK+K++++
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGF-DKFKELYV 297
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 85.8 bits (203), Expect = 2e-17
Identities = 40/88 (45%), Positives = 63/88 (71%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 383
K LAGGI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L
Sbjct: 36 KHLLAGGIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILG 89
Query: 384 FWRGNFANVIRYFPTQALNFAFKDKYKQ 467
+++GN NVIR FP A+ FA ++YK+
Sbjct: 90 YFKGNGTNVIRIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 65.3 bits (152), Expect = 3e-11
Identities = 40/92 (43%), Positives = 53/92 (57%)
Frame = +3
Query: 219 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 398
GG A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRGN
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGN 196
Query: 399 FANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 494
ANVI+ P + F +K K+ L G D K
Sbjct: 197 GANVIKIAPESGIKFFAYEKAKK--LVGSDTK 226
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/88 (26%), Positives = 48/88 (54%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
LAG ++ S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+R
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYR 287
Query: 393 GNFANVIRYFPTQALNFAFKDKYKQVFL 476
G F +++ P ++ A + K +L
Sbjct: 288 GLFPSLLGIIPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +3
Query: 171 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDA 347
MS + F ++F G +A +SKTA APIERVKLL+Q Q + K YKG+VD
Sbjct: 1 MSGKKQNLHFVENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDC 60
Query: 348 FVRIPKEQGLLSFWR 392
+R + +G+ SFWR
Sbjct: 61 TMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 57.2 bits (132), Expect = 9e-09
Identities = 27/85 (31%), Positives = 48/85 (56%)
Frame = +3
Query: 192 VAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 371
+ + + FL GG SA ++++ +P+E VK+L QV + G++ F + K +
Sbjct: 56 ITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV-------GTQEAKPGLIRTFASVYKRE 108
Query: 372 GLLSFWRGNFANVIRYFPTQALNFA 446
G+ +FW+GN + IR FP A+ +A
Sbjct: 109 GIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
LAG S ++ V P E +K L VQHV+K ++ YKG+ A I +E+G+L+ ++
Sbjct: 157 LAGTSSTLIAMVTVYPCEVIKTRLTVQHVNK---SNAHYKGMRHALKTILREEGILALYK 213
Query: 393 GNFANVIRYFP 425
G + + FP
Sbjct: 214 GVTPSFLGLFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +3
Query: 216 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 395
AG ++ +AP++ VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++G
Sbjct: 39 AGSVAGLAQVPLIAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQG 97
Query: 396 NFANVIRYFPTQALNF 443
N +R P A+ F
Sbjct: 98 NTVTAVRDIPGFAVYF 113
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +3
Query: 174 SNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFV 353
SNL A +AGG + VS + P + +K +Q + RYKG++D +
Sbjct: 124 SNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCAL 179
Query: 354 RIPKEQGLLSFWRGNFANVIRYFPTQALNF 443
+ KE+G++ F RG + ++R F Q L F
Sbjct: 180 QSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = +3
Query: 225 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 404
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
Query: 405 NVIRYFPTQALNFAFKDKYKQVF 473
++ P +A+ D + +F
Sbjct: 980 QLLGVSPEKAIKLTTNDFVRGIF 1002
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 43.2 bits (97), Expect = 1e-04
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Frame = +3
Query: 186 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGI 338
DP K F + GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G+
Sbjct: 11 DPSILVK-FCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGM 69
Query: 339 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 473
+ V + K +G+ + ++G + R ++ D+ K ++
Sbjct: 70 LGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMY 114
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 168 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGI 338
K+ N P + G +S +SK + P + +K +QVQ + Q+Y G+
Sbjct: 19 KVHNPYKPADVIESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGV 78
Query: 339 VDAFVRIPKEQGLLSFWRG 395
D F I KE+G + ++G
Sbjct: 79 KDCFRTILKEEGAMGLFKG 97
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 210 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 389
F +GGI+ +S P++ VK Q + +Y G D +I G+ +F
Sbjct: 361 FFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFG 420
Query: 390 RGNFANVIRYFPTQA 434
+G A ++R FPT A
Sbjct: 421 QGLLATILRGFPTNA 435
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIA----------ADQRYKGIVDAFVRIP 362
++G I+ V P+E K +QVQ +++ Y G +D ++
Sbjct: 249 ISGAIAGGVQSIVCCPMELAKTRVQVQGQGQKLVHVFFLTNTETKQMAYTGSLDCLKKVF 308
Query: 363 KEQGLLSFWRGNFANVIRYFPTQALNF 443
+GL +RG R P AL F
Sbjct: 309 HSEGLRGCFRGMAITTTRDIPAFALYF 335
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/81 (25%), Positives = 43/81 (53%)
Frame = +3
Query: 201 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 380
A++ +AG +S + A P++ +K+ LQ + K +KG +D F++ + +GL
Sbjct: 21 ARNLIAGSVSGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLR 79
Query: 381 SFWRGNFANVIRYFPTQALNF 443
++G + ++ P+ AL F
Sbjct: 80 GLYKGMLSPLLMATPSTALTF 100
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
L G S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++
Sbjct: 426 LVGTSSTLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYK 482
Query: 393 G 395
G
Sbjct: 483 G 483
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 40.7 bits (91), Expect = 8e-04
Identities = 30/100 (30%), Positives = 44/100 (44%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 383
K LAGGI+ + P E VK LQ+ + AA Y+G +D + K G+L
Sbjct: 42 KAILAGGIAGGLEICCTFPTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLG 97
Query: 384 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQF 503
+RG + + P ++ FA + K K TQF
Sbjct: 98 LYRGLSSLLYGSVPKASVRFAVFEYLKNKMADENGKLTQF 137
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +3
Query: 210 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 389
F A IS + A P++ K +Q + I YKG +D RI + +G+ + W
Sbjct: 97 FGASMISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALW 153
Query: 390 RGNFANVIRYFPTQALNFAFKDKYKQV---FLGG 482
+G R P L F F ++ + F GG
Sbjct: 154 KGFTPYYFRIGPHTVLTFIFLEQLNRAANYFYGG 187
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 327 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 476
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +3
Query: 324 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQ 467
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +3
Query: 210 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL-LSF 386
F+ GG++ AVS+T P++ V+ +Q ++ + +Y ++ V + K+ G+
Sbjct: 176 FVCGGVAGAVSQTIAYPLDVVRRRMQ---LAGAVPDGHKYNTCINTLVNVYKDDGIRRGL 232
Query: 387 WRGNFANVIRYFPTQALNFAFKDKYKQ 467
+RG N +R P A+ F + KQ
Sbjct: 233 YRGLSINYLRVCPQVAIMFGVYEVTKQ 259
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +3
Query: 336 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 470
++ AF I + +GLL++++GN A ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +3
Query: 309 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 473
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
LAG + A+ PIE +K LQ+ Y+G++ + KE+G+ +F+R
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQMY--------GSPYRGVIHCATSVFKEEGIRAFYR 53
Query: 393 GNFANVIRYFPTQALNFAFKDKYKQVF--LGGVDKKT 497
+ P Q L+F + ++ LGG D KT
Sbjct: 54 SYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKT 90
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 339 VDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFW 506
+DA ++IP+ +GL S WRG ++ P + F D+ K + G + +T W
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK-ISYGFKNNETNLW 118
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 213 LAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 389
+ G+S+ V +A+A P + VK+ Q + + I YK + AF +I K++G L W
Sbjct: 118 IVAGVSSGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLW 173
Query: 390 RG 395
G
Sbjct: 174 TG 175
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 213 LAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 389
LA + A T VA P++ V+ Q + Y+G +D + + +G+L+ +
Sbjct: 215 LASALVAGFVATCVASPVDIVRTRFMTQPKDTK-GRPLVYQGTLDCIYKTVRHEGILALY 273
Query: 390 RGNFANVIR 416
+G F N R
Sbjct: 274 KGFFPNWTR 282
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +3
Query: 210 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 389
F++G + V+ + P++ V+ L VQ +S + ++ Y GIV A RI E+G+ +
Sbjct: 32 FVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLY 89
Query: 390 RGNFANVIRYFP 425
+G +++ P
Sbjct: 90 KGLVPSLVSIAP 101
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +3
Query: 162 SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIV 341
S K+ DP + AG I+ + + P++RVK +LQ++ + Y G V
Sbjct: 126 SYKLPVSKDP-ELLRSLAAGMIAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPV 180
Query: 342 DAFVRIPKEQGLLSFWRGNFANVIRYFP 425
D RI +E G+ ++G +R P
Sbjct: 181 DCLRRIYREAGVRGVYKGISVTAMRDIP 208
Score = 35.1 bits (77), Expect = 0.040
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 383
K+ +AG + A + P++ +K+ LQ + K YK D F +I + +G+
Sbjct: 40 KNSIAGSAAGAAANLVGFPLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYY 98
Query: 384 FWRGNFANVIRYFPTQALNFA 446
+RG ++ P + F+
Sbjct: 99 LFRGVTVPILNSIPNTTVLFS 119
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 255 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 395
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 34.7 bits (76), Expect = 0.052
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 383
+ FLAGG ++ V +T P++ + L +Q Q + KG + G
Sbjct: 107 RGFLAGGCASIVGQTITVPVDIISQKLMIQ---GQGDRKVKLKGARILIRETFHQHGPGG 163
Query: 384 FWRGNFANVIRYFPTQALNFA 446
F++G FA+++ Y P+ A+ +A
Sbjct: 164 FYKGYFASLMTYAPSSAIWWA 184
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 216 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 395
AG ++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G
Sbjct: 211 AGCLAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKG 267
Query: 396 NFANVIRYFP 425
+I P
Sbjct: 268 AVPRMIVIAP 277
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.7 bits (76), Expect = 0.052
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 258 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 437
PI+ K +QVQ + Q A +Y+ + A I + G+ ++G A ++R P
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 438 NFAFKDKYKQV 470
F F + K +
Sbjct: 281 FFGFYEFTKNL 291
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 33.9 bits (74), Expect = 0.091
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 357 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 470
+P+E L W G F++VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 216 AGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYK-GIVDAFVRIPKEQGLLSFWR 392
AG +A + P E +K LQ QH + I+ K G++D ++I + G +R
Sbjct: 112 AGSGAAFFMSFVLCPAELIKCRLQAQHQTNLISGMAGPKSGVIDVTMQIIRNDGFQGLFR 171
Query: 393 GNFANVIRYFP 425
G A R P
Sbjct: 172 GMTATWAREVP 182
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 357 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 470
+P+E +L W G ++VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 213 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
LA GIS ++ + P E + L+ Q + Q+Y+ + +E+G +
Sbjct: 936 LAAGISKCIATSLCYPHEVARTRLRQQE--SEFLGRQKYRSFFQTLGTVLREEGWRGLYG 993
Query: 393 GNFANVIRYFPTQALNF 443
G +VIR P A+ F
Sbjct: 994 GLGTHVIRQVPNTAIMF 1010
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 222 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 392
G+S +KT AP+ER+K+L Q Q+ + + A I K++GL +++
Sbjct: 63 GLSTCCAKTTTAPLERLKILFQAQN------KHYKNMSVFGALKAIYKKEGLQGYYK 113
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 31.5 bits (68), Expect = 0.49
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 232 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 98
A++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 30.7 bits (66), Expect = 0.85
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 240 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 398
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 30.7 bits (66), Expect = 0.85
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLL 380
K+F+ G +A+ + P+E VK +Q+Q + + Y+ + A I K +G+L
Sbjct: 6 KEFVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGIL 65
Query: 381 SFWRGNFANVI 413
+ +G F +I
Sbjct: 66 AMQKGLFPALI 76
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 30.7 bits (66), Expect = 0.85
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 232 AEIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 98
A++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
Length = 198
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 216 AGGISAAVSKTAVAPIERVKLLLQ 287
AGG++ S+T AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 333 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 470
G+V + G +RGN A ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 379
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 379
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 519 QRSNARTASSCQRRRGTPACTCP 451
Q + R S CQRRRG C CP
Sbjct: 934 QLVSCRFYSKCQRRRGGAQCVCP 956
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = +3
Query: 204 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 383
K+F AGG P++ +K+ LQ K + G D ++ + +G
Sbjct: 28 KNFFAGGFGGVCCIATGHPLDTIKVRLQTMPRPKP-GEKPMFTGTFDCAMKTIRNEGFFG 86
Query: 384 FWRGNFANVIRYFPTQALNF 443
++G A + P A+ F
Sbjct: 87 LYKGMAAPITGVTPIFAICF 106
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +3
Query: 183 ADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIP 362
ADP + + AG + + +AP ER+K LLQ+ + K A + IV + V +
Sbjct: 122 ADPT-YLQIMNAGAFAGVCTTAIMAPGERIKCLLQILALQK---AKTEFPNIVLSIVYVD 177
Query: 363 KEQGLLSFWRGNFANVIRYFPTQALNFA 446
+ +S + RY + LN+A
Sbjct: 178 VDLSKISDFSVMLPFATRYILSH-LNYA 204
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 379
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 379
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 360 PKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 476
P+E L W G ++VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 357 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 473
+P+E L + G ++VI F A+N F+++YK+VF
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVF 301
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 357 IPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 470
+P+E +L + G ++VI F A+N FK++YK++
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKI 304
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 278 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 379
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_26302| Best HMM Match : Reg_prop (HMM E-Value=3.1e-06)
Length = 117
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 333 GIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKY--KQVFLGGVDKKTQFW 506
G++ + V ++ + W G + +Y N+ +D V G+DKK Q W
Sbjct: 17 GLIQSQVTAIEQDKMGHLWMGTIGGLAKYDGHTFTNYTIRDGLLNNSVTALGIDKKNQIW 76
>SB_18153| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=5)
Length = 237
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/112 (19%), Positives = 49/112 (43%)
Frame = +3
Query: 138 IHLVKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAA 317
I +K S + ++A V+ + + + +K+A +K+L + + Q+
Sbjct: 7 IDSLKFEISESIKDVAKQVSNLSNKVTSEFKSVKNKSASTAETILKILGDLGEIKDQLLK 66
Query: 318 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 473
+ + + D+ R K G+ + R N ++ ++Y PT N + K +F
Sbjct: 67 TE--ETVADS-TRYKKSGGIAVYIRENISSGVKYIPTDNENVLWVKVCKNIF 115
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 53 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 163
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 32 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 154
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,382
Number of Sequences: 59808
Number of extensions: 343359
Number of successful extensions: 1040
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -