Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0854
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.35 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   10.0 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   10.0 

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 223 NN*NQKL-INENVSYKNLQHNKKKYTRTKTINL 128
           NN N K   N   +Y N  +NKK Y +   IN+
Sbjct: 92  NNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 229 TRNN*NQKLINENVSYKNLQHNKKKY 152
           T +N N K    N +Y N  +NKK Y
Sbjct: 88  TIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 229 TRNN*NQKLINENVSYKNLQHNKKKY 152
           T +N N K    N +Y N  +NKK Y
Sbjct: 88  TIHNNNYKYNYNNNNYNNNNYNKKLY 113


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 214 NQKLINENVSYKNLQHNKKKYTRTKTINL 128
           N    N N  Y    +NKK Y +   IN+
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 223 NN*NQKLINENVSYKNLQHNKKKYTRTKTINLNVAN 116
           NN N K    N +Y N  +N       K +  N+ N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 345 RYHLLENIYKAPDCIRYFELMELSEINLRVH 253
           R H  E  YK   C R FE       ++R+H
Sbjct: 140 RIHTKERPYKCDVCERAFEHSGKLHRHMRIH 170


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 299 RIQSGAL*IFSSRWYLPSRKIVINFTIYTYTELTLQYTDIYYLLHITI 442
           ++ +  L + S+ + + +RKI  NF    +   T+  T I +L  + I
Sbjct: 678 QLYNALLILISTVYAVKTRKIPENFNESKFIGFTMYTTCIIWLAFVPI 725



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 INFTIYTYTELTLQYTDIYY 424
           I FT+YT   + L +  IY+
Sbjct: 708 IGFTMYTTCIIWLAFVPIYF 727


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 299 RIQSGAL*IFSSRWYLPSRKIVINFTIYTYTELTLQYTDIYYLLHITI 442
           ++ +  L + S+ + + +RKI  NF    +   T+  T I +L  + I
Sbjct: 768 QLYNALLILISTVYAVKTRKIPENFNESKFIGFTMYTTCIIWLAFVPI 815



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 365 INFTIYTYTELTLQYTDIYY 424
           I FT+YT   + L +  IY+
Sbjct: 798 IGFTMYTTCIIWLAFVPIYF 817


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,920
Number of Sequences: 438
Number of extensions: 2439
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)