Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0854
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    27   5.7  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    27   7.5  
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s...    27   9.9  
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s...    27   9.9  

>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 374 TIYTYTELTLQYTDIYYLLHITINRFFPS-K*NLNPVKDIWVFES 505
           T+Y +  LT++  D  +++H  IN   P    +LNP +D+ V E+
Sbjct: 451 TVYIFQCLTMRLDDKEFVIH-AINNLLPEIHRHLNPPRDLLVDEN 494


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 LWFSFLCIFFYCAVNF 180
           LW S +C+FF+ AV F
Sbjct: 54  LWISIICVFFFFAVLF 69


>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 484

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 222 FLVIQIMNYDYEPSSLFQIVP-LIQNSEYSLVLCKYSLV 335
           F+ I   ++  +P  L + +P LI N E SLV C++  V
Sbjct: 141 FVAIFDADFQPDPDFLERTIPFLIHNHEISLVQCRWKFV 179


>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535 isoform contains GG
           acceptor splice site at intron 1
          Length = 556

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 222 FLVIQIMNYDYEPSSLFQIVP-LIQNSEYSLVLCKYSLV 335
           F+ I   ++  +P  L + +P LI N E SLV C++  V
Sbjct: 213 FVAIFDADFQPDPDFLERTIPFLIHNHEISLVQCRWKFV 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,071,012
Number of Sequences: 28952
Number of extensions: 138513
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)