Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0853
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 30 0.25
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.3
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 27 2.3
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 26 3.1
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 26 4.1
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.2
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 7.2
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 7.2
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 25 9.5
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -1
Query: 479 LCLHDQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATGQEI 300
LCL+ ++ VN NGKFN ++ S L K NE+ ++ +L + + +E+
Sbjct: 390 LCLNTSSIVFNATVNFTRNGKFN-TSIFSSNLNPKVNELLQADFKQAILRKRKNESPEEV 448
Query: 299 D 297
+
Sbjct: 449 E 449
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 214 SMSNTLFLSTLTLGALFSFFINLSAILSSISWPVASLYSANTFF*SLLNGTSLS 375
S S+T ST SF+ N++ S++S P + +TF S + +SLS
Sbjct: 660 SSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLS 713
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 434 AENNGKFNWHAVIMSVLQKK 375
AE NG + HA++MS+L KK
Sbjct: 7 AEFNGSGSMHALLMSILSKK 26
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 232 IGYCSLNEFLYGFET*KKILQFLKTCFPC 146
I YC N+ G T +I Q CF C
Sbjct: 196 INYCKANKIGVGIGTTPRIAQLTNECFTC 224
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 3.1
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +1
Query: 259 LFSFFINLSAILSSISWPVASLYSANTFF*SLLN-------GTSLSFFCKTDIITACQLN 417
+ +FFI+L + I P + Y N F L GT+++FF I+ A +
Sbjct: 98 ILNFFISLVVLFGLIMKPYS--YPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFIT 155
Query: 418 LPLFSALTS 444
L +F ALT+
Sbjct: 156 LGVFVALTA 164
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 344 KKVLAEYSEATGQEIDDRIADKFIKKLK 261
K+ E + +T +E D + KF+KKLK
Sbjct: 74 KRSFDESNLSTNEEADKPVESKFVKKLK 101
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 454 PESKRLMLRTMANLTGTQLLCQFCRRKIMK 365
P +++L T + T LC +CRR+ +K
Sbjct: 6 PSLSKVLLVTAHPIPTTHYLCLYCRRRKIK 35
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 467 DQNVARIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSE-ATGQEIDDR 291
++N ARIEE+N++ I+ KD EV K + K+ E E T ++ D
Sbjct: 166 EENGARIEELNSDEEDAEQAEEEILEKPVPKD-EVAEKHSKDKLKKEEKEKKTAVDVSDS 224
Query: 290 IADK 279
+ K
Sbjct: 225 VNGK 228
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 214 SMSNTLFLSTLTLGALFSFFINLSAILSSISW 309
S+ LFL T GA+ S I+ +A+ ++W
Sbjct: 510 SIITALFLFTNAFGAILSICISSTAVNPKLTW 541
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 401 VIMSVLQKKDNEVPFKRLQKKVLAEYSEATGQEIDDRIADKFIKK 267
V++ + K E F+RL K V E + +E+ I K +KK
Sbjct: 104 VVVKIDSKLTEEEEFERLDKLVEGNRVEFSDEELQKLIDFKVLKK 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,337
Number of Sequences: 5004
Number of extensions: 34452
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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