Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0853
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    30   1.4  
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    27   9.6  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    27   9.6  

>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
            29210132-29210171,29210254-29210323,29210419-29210488,
            29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 205  KIHSMSNTLFLST-LTLGALFSFFINLSAILSSISWPVASLYSANTF 342
            +I S SN  F++  +TLG L S  INL  + SS  W  + L S ++F
Sbjct: 892  EILSSSNLKFVAMFITLGKLVSERINLVEMFSSPEWASSDLASRSSF 938


>11_01_0533 +
           4214900-4215162,4215986-4219043,4219613-4221539,
           4221561-4222094,4222388-4222842,4223073-4223189,
           4223319-4223477
          Length = 2170

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 136 KKEHMGNRSLEIVKFSFMFQIHIKIHSMSNTLFLSTLTLGALFSFFINLSAILSSI 303
           +KE    R LE+ K     ++ I  HS +  LF+S L  G   +  +N +A+LS++
Sbjct: 122 EKEVTTKRLLELAKEKKEARVLIGSHSQAIPLFISILRSGTSIA-KVNAAALLSAL 176


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -1

Query: 305 EIDDRIADKFIKKLKSAPNVRV-DKNRVLLIE*IFIWI*NM 186
           E++ ++ +KF + L S P+VRV +++  L+I+ I I + N+
Sbjct: 256 EVNIKLKEKFARALASLPSVRVSEESWSLMIQKILIVVNNL 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,816
Number of Sequences: 37544
Number of extensions: 171745
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)