Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0853
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)                    29   3.2  
SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)                 27   9.8  
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = -1

Query: 419 KFNWHAVIMSVLQKK-DNEVPFKRLQKKVLAEY---SEATGQEIDDRIADKFIKKLKSAP 252
           KF W ++I  VL++  +NE+  KRL+KKVL E+     +T    ++ +   F KK+   P
Sbjct: 147 KFKWSSIIKRVLREAPNNELSVKRLRKKVLTEFLSHGGSTKSYNNNELRALFEKKINKNP 206

Query: 251 NVRVDKNRVLL 219
           +V+V K R  L
Sbjct: 207 SVKVMKERAKL 217


>SB_56329| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 573

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 191 NMKENFTISKDLFPMCSFLC-IYNFPL 114
           NM  N T+   +FP+C+ LC I++ PL
Sbjct: 221 NMTHNQTLRAYIFPVCAVLCAIFSIPL 247


>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 180 FFHVSNPYKNSFNEQYPIFVNPHIRST 260
           F   S PY+N  NE+ PI   P I S+
Sbjct: 578 FIAFSEPYRNRNNEKIPITAKPAIESS 604


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -1

Query: 389  VLQKKDNEVPFKRLQKKVLAEYSEATGQEIDDRIADKFIKKLKSAPNVRVDKNRV 225
            +LQ  +N+   K ++ K+L   S + G  ++D  A   +   K   N   +K  +
Sbjct: 2145 ILQSAENKRQLKEIEDKILEVLSSSEGNILEDETAINVLSSSKVLANEISEKQAI 2199


>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
          Length = 566

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 428 NNGKFNWHAVIMSVLQK---KDNEVPFKRLQKKVLAEYSEATGQEIDDRI 288
           N G    + + M VL +   K N +  KR + K LAEY+E    +I DR+
Sbjct: 147 NKGDDKDYKIAMEVLTEHKLKKNVLSLKR-RVKSLAEYNEEKDNQISDRV 195


>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 26/79 (32%), Positives = 37/79 (46%)
 Frame = -1

Query: 452 RIEEVNAENNGKFNWHAVIMSVLQKKDNEVPFKRLQKKVLAEYSEATGQEIDDRIADKFI 273
           R+++V + NN  F   A I  V   KD  V       KV  E  E   Q++ DR+A    
Sbjct: 253 RVKQVLSANNEIF---AQIEGVFDGKDFRV-------KVTREELEEMCQDLFDRVAGPVN 302

Query: 272 KKLKSAPNVRVDKNRVLLI 216
           + LKSA     D + V+L+
Sbjct: 303 RALKSASMTMNDIDSVVLV 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,450
Number of Sequences: 59808
Number of extensions: 222582
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)