Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0853
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,...    32   0.28 
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    27   6.1  

>At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           [Brassica oleracea] SWISS-PROT:P49676
          Length = 786

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 142 EHMGNRSLEIVKFSFMFQIHIKIHSMSNTLFLSTLTLGA--LFSFFINLSA 288
           +H+GN  +E  KF ++F+   K +  +N + L ++T+G     +FF N SA
Sbjct: 531 QHIGNYRVENGKFHYVFEQDAKFNPGANVITLLSITVGLPNYGAFFENFSA 581


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 154  NRSLEIVKFSFMFQIHIKIHSMSNTLFLSTLTL 252
            N  L++   +F+  I ++I S+SN LFLS  T+
Sbjct: 2327 NHLLKVEHSTFLIYIFLEILSLSNFLFLSCSTI 2359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,975
Number of Sequences: 28952
Number of extensions: 161297
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)