Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0852
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4)                      31   0.66 
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_7386| Best HMM Match : Helicase_C (HMM E-Value=0.086)               28   4.7  

>SB_35632| Best HMM Match : Nsp1_C (HMM E-Value=4)
          Length = 429

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 235 LFESYKAFCNRKQDRIYLFYFKKCIAN 315
           ++ SY  F NR  DR+ L YF +C+ N
Sbjct: 361 VYRSYGKFLNRYGDRLALSYFSECLQN 387


>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 284 IYFISKNASQTLQYSTALSRNRFSYE*RHLGLKSTMTDHVQQSTM 418
           IY  +++A Q  + ++ LSR   S +  H GLKS   D VQQ  M
Sbjct: 253 IYCRTRDACQ--EVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWM 295


>SB_7386| Best HMM Match : Helicase_C (HMM E-Value=0.086)
          Length = 100

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 284 IYFISKNASQTLQYSTALSRNRFSYE*RHLGLKSTMTDHVQQSTM 418
           IY  +++A Q  + ++ LSR   S +  H GLKS   D VQQ  M
Sbjct: 35  IYCRTRDACQ--EVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWM 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,213
Number of Sequences: 59808
Number of extensions: 246509
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)