Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0852
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.7  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   6.5  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YKFIKTTYNLYCDILYYNV 66
           Y +    YN  C  LYYN+
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YKFIKTTYNLYCDILYYNV 66
           Y +    YN  C  LYYN+
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YKFIKTTYNLYCDILYYNV 66
           Y +    YN  C  LYYN+
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 10  YKFIKTTYNLYCDILYYNV 66
           Y +    YN  C  LYYN+
Sbjct: 98  YNYNNNNYNNNCKKLYYNI 116


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 501 LNYMSCCPLQ*SNVGYRIR 557
           + Y SCCP    ++ Y IR
Sbjct: 190 VEYYSCCPEPYPDITYEIR 208


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 22  KTTYNLYCDILYYNV 66
           K  YN  C  LYYN+
Sbjct: 97  KYNYNNNCKKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,717
Number of Sequences: 438
Number of extensions: 2704
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)