Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0851
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        160   1e-39
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    40   0.002
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_30432| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8047| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  29   4.5  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 29   4.5  
SB_54105| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   4.5  
SB_46691| Best HMM Match : DUF765 (HMM E-Value=9.5)                    28   5.9  
SB_44312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_19273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_56744| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_42337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_21293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_5250| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_56961| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15)              28   7.8  
SB_8550| Best HMM Match : MASE1 (HMM E-Value=1.5)                      28   7.8  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  160 bits (388), Expect = 1e-39
 Identities = 78/113 (69%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
 Frame = +2

Query: 335 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 505
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 506 DTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSG 664
           DTGSSNLWVPSKKC +TNIACLLH+KYDS KS TY  NGT+FAI+YGSGSLSG
Sbjct: 61  DTGSSNLWVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSG 113


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 32/101 (31%), Positives = 44/101 (43%)
 Frame = +2

Query: 362 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 541
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN  V + 
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 542 KCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSG 664
              Y  I    H      KS +Y       ++ Y  GS  G
Sbjct: 70  AHPY--IPYYFH----IDKSTSYKDLNKPVSVPYTQGSWEG 104


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 323 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 439
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_30432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 63  RLVNRKNNAVPVPNSCSPGDP 1
           +LV  KN    + NSCSPGDP
Sbjct: 109 QLVRAKNQKEIISNSCSPGDP 129


>SB_33698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 57 VNRKNNAVPVPNSCSPGDP 1
          + R  N+ P  NSCSPGDP
Sbjct: 13 ITRVTNSRPRSNSCSPGDP 31


>SB_8047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 3  DPPGCRNSAQVLR 41
          DPPGCRNS +V+R
Sbjct: 17 DPPGCRNSIEVIR 29


>SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 3  DPPGCRNSAQVLRC 44
          DPPGCRNS  +++C
Sbjct: 17 DPPGCRNSISLVQC 30


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 3   DPPGCRNSAQVLRC 44
           DPPGCRNS  V  C
Sbjct: 74  DPPGCRNSITVFHC 87


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 114 IDYCYLLIY*NRTL*P*RLVNRKNNAVPVPNSCSPGDP 1
           ID CY  ++ ++ L            V V NSCSPGDP
Sbjct: 186 IDSCYTAVFIHKNLMKIISSPEICKTVNVSNSCSPGDP 223


>SB_54105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 42  NAVPVPNSCSPGDP 1
           N  PV NSCSPGDP
Sbjct: 60  NLRPVSNSCSPGDP 73


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 311 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 427
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_46691| Best HMM Match : DUF765 (HMM E-Value=9.5)
          Length = 139

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 51 RKNNAVPVPNSCSPGDP 1
          R+ +A  V NSCSPGDP
Sbjct: 8  RERSASQVSNSCSPGDP 24


>SB_44312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 48 KNNAVPVPNSCSPGDP 1
          KN  V   NSCSPGDP
Sbjct: 7  KNRCVTSSNSCSPGDP 22


>SB_19273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 45 NNAVPVPNSCSPGDP 1
          N  +P+ NSCSPGDP
Sbjct: 12 NIDIPLSNSCSPGDP 26


>SB_56744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 33 PVPNSCSPGDP 1
          PV NSCSPGDP
Sbjct: 29 PVSNSCSPGDP 39


>SB_42337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -2

Query: 36 VPVPNSCSPGDP 1
          VP  NSCSPGDP
Sbjct: 8  VPASNSCSPGDP 19


>SB_21293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 57 VNRKNNAVPVPNSCSPGDP 1
          +N+++  +   NSCSPGDP
Sbjct: 3  LNKRDERLSTSNSCSPGDP 21


>SB_5250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 48 KNNAVPVPNSCSPGDP 1
          +N+ +   NSCSPGDP
Sbjct: 4  RNDGIKTSNSCSPGDP 19


>SB_56961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 33 PVPNSCSPGDP 1
          PV NSCSPGDP
Sbjct: 2  PVSNSCSPGDP 12


>SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 33 PVPNSCSPGDP 1
          PV NSCSPGDP
Sbjct: 58 PVSNSCSPGDP 68


>SB_32763| Best HMM Match : Histone_HNS (HMM E-Value=0.15)
          Length = 481

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 63  RLVNRKNNAVPVPNSCSPGDP 1
           + +  K N     NSCSPGDP
Sbjct: 346 KTLEEKTNEASASNSCSPGDP 366


>SB_8550| Best HMM Match : MASE1 (HMM E-Value=1.5)
          Length = 317

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 39  AVPVPNSCSPGDP 1
           AV V NSCSPGDP
Sbjct: 190 AVAVSNSCSPGDP 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,368,168
Number of Sequences: 59808
Number of extensions: 447861
Number of successful extensions: 2959
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2959
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)