Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0850
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.100
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   31   0.93 
SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)                   30   1.6  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)                      29   3.8  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              29   3.8  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)            28   5.0  
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          27   8.7  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         27   8.7  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  PTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHH 216
           P   T    P+  P   + P HP     S+ PY  T    L G +  REP P  S+  H 
Sbjct: 474 PHHATSYNAPSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQ 531

Query: 217 P 219
           P
Sbjct: 532 P 532



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 91  QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 219
           + P HP     S+ PY  T    L G +  REP P  S+  H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 481
           ST +S  T  RT+ + S ++ R+C++   T GR+   RGK   +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 330 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPHC 226
           H  C +   +LQ+R LCH L HK    V ++ C HC
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSHC 362


>SB_47875| Best HMM Match : rve (HMM E-Value=3.3e-16)
          Length = 488

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 150 RSGAVRPVADNFFFRMFRILVSVREEVGVERHCYTCRYG-RVSNPRAE 10
           ++ A  PVADNF  R  +I V +   + V +    CR G R+S  R +
Sbjct: 53  KNEATLPVADNFKDRFQQIQVEIEHMIAVLQQMELCRSGPRISKLRVD 100


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +2

Query: 272 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS 451
           N  W S  CS  LA        +N  + ++  RNR  +T +G+       +A      L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283

Query: 452 RGKSFTRNATMQQSTHILI 508
                 RN T +   HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = +1

Query: 109 EEEVVSNWPYRTTPLVLPGAKVRRE---PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQK 279
           ++E++ +  +   P     A    E   PG  ++  R  P P    P N +   +L  +K
Sbjct: 290 KQEILESQEFAQAPATPRSATTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQHEK 349

Query: 280 VAESV-LQRVVGEEAPKVLHKQFNSPINL 363
           V E++ ++R+  EE  K   K  N    L
Sbjct: 350 VVETLEIRRMAVEEKRKKRMKYENGETGL 378


>SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -2

Query: 246 VRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFFFRMFRILVSVREEVG 67
           V + P    G+  +   C A +P  +++  H R    +P+   F+    +I ++V     
Sbjct: 63  VAKLPVRMFGIRYEEATCAAHVPCTINNSPHSRLNK-QPIPSRFYPVFDKIGLTVAGYQP 121

Query: 66  VERHCYTCR 40
             R CY C+
Sbjct: 122 GTRWCYRCK 130


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 302 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 412
           EWL  +H R C   S  Q+   T+NRT+ T S  ++RL
Sbjct: 51  EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 184 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 360
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 176 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 235

Query: 361 L 363
           L
Sbjct: 236 L 236


>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
          Length = 201

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 184 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 360
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 21  PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 80

Query: 361 L 363
           L
Sbjct: 81  L 81


>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -2

Query: 396 PDRVCNVLFRV*IDWRVELLVQHLRCLFANHSLQHR-----LCHLLFHK 265
           PD   N +  + +  R + L+ H+R  F N   + R     L HL+FHK
Sbjct: 71  PDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGLLIHLIFHK 119


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
 Frame = +1

Query: 145 TPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN--HDYRDTLMKQKVAESVLQRVVGEE 318
           TPL L      R P P    L H P P  +A  +  H +   L+    + S    V    
Sbjct: 420 TPLTLSTKPCFRTPHPLSQALLHIPRPFNQALLHVPHTFNQALLHSHPSPSQPSPVSHPP 479

Query: 319 APKVLHKQFNSPINLYSEQNIANSIRQQTSP 411
           A  +LH    SP    S +     +   T P
Sbjct: 480 AQALLHTSHPSPATHPSPKPCFTFLTLSTKP 510


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = +3

Query: 33  VHTYKCNNVAQPQLLPERIPGS*TS*RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPAS 212
           ++T++ N   +   +P R P   T+ + S      P  S       GP    P R+ P S
Sbjct: 385 LNTFRNNIRNRKDSMPPRPPKPSTNGQASVDGQLKPPSSPSPRRQTGPPSPKPSRQPPPS 444

Query: 213 SPQPSNEGTS*PRLP*YPYET 275
           SPQ     T   R P + YET
Sbjct: 445 SPQ-RIAPTPGHRRPVFMYET 464


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 79  PNGYQDPKH-PEEEVVSNWPYRTTPLVLPGAKVRREPGP 192
           P+ +  P+H P+ E +    Y++TP+  P  K R  P P
Sbjct: 432 PDSHALPQHTPQGEDLGQAAYQSTPISKPSVKSRLGPRP 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,238
Number of Sequences: 59808
Number of extensions: 453123
Number of successful extensions: 1450
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)