Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0850
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   9.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   9.0  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 1   LQEFGTRVRYTSIPTSVTMSLNPNFF 78
           +QE   R+RY   PTS    + PN +
Sbjct: 368 IQEQIPRLRYIGPPTSFPRFIPPNAY 393


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 28  YTSIPTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLV 156
           YT+ P ++   LNPN        P   ++E++ ++  R +P +
Sbjct: 210 YTACPPTLACPLNPN------PQPLTGQQELLQDFSKRFSPAI 246


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +2

Query: 302 EWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQL 421
           +W++    +    +  L       +TL T +GS L +C L
Sbjct: 80  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICML 119


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 87  SVREEVGVERHCYTCR 40
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 87  SVREEVGVERHCYTCR 40
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,416
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)