Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0850
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44200.1 68416.m04739 protein kinase family protein contains ...    31   0.76 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   0.76 
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    29   1.8  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   3.1  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   4.1  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   4.1  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    28   4.1  
At5g03890.1 68418.m00365 hypothetical protein                          27   7.1  
At1g12970.1 68414.m01506 leucine-rich repeat family protein            27   7.1  

>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 319 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 486
           AP  LH + +  +N +S+     S+  Q S L  N  +  PH V   V +  RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 449  SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFRFLQTIYLFHAK 583
            S+ ++  ++A+M++   ++ D L LLSIYY++ R  Q + L   K
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCRPRQEVVLSELK 2374


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 129 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 248
           +A P  +S  P    P  A   PH++ P S PQP+N  +  P
Sbjct: 1   MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 79  PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 243
           P+    P+ P+E    N PY  +P+     K RR P P   +    P+P    PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 268 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 396
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 268 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 396
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 281 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 391
           ++  C  +WL   HL C  +  TL S I T N  L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318


>At5g03890.1 68418.m00365 hypothetical protein
          Length = 179

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 360 IDWRVELLVQHLRCLFANHSLQHRLCHLL 274
           +++R  + V H+   F+ HS+ H   HLL
Sbjct: 22  LEYREPISVHHILTQFSGHSISHNNTHLL 50


>At1g12970.1 68414.m01506 leucine-rich repeat family protein
          Length = 464

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 PTESYLRHHPNPAMRAPPN 246
           P  SY+ HH +PA  APP+
Sbjct: 9   PLLSYVLHHSDPASHAPPS 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,354
Number of Sequences: 28952
Number of extensions: 303911
Number of successful extensions: 913
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)