Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0849
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.94 
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    27   2.2  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.9  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   6.6  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.6  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    25   6.6  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 302 SRPIVEALRRVSGQPFR-LPGDSVPRLEVGHQ*LSIPSTRV 183
           S P+  + +RV G   R LP   + RL   HQ L IP+T V
Sbjct: 152 SSPLCNSSKRVVGMLRRFLPSSRMVRLSKAHQPLRIPTTGV 192


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 519 AFRRWIVLIHEHCTPDGTSSILI 587
           AFRR++ L H+  TPD TS  +I
Sbjct: 18  AFRRFVSLTHKDPTPDTTSCNII 40


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 58  PLICLVTQHLYTRVHFWRMADSGLFLNTFVPGHL 159
           P+I  +T++ Y+  HFW    S +F     P ++
Sbjct: 360 PVIKAITEYFYSPPHFWLDETSEIFKRIGFPSYI 393


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 587 NQYRRSSIWSTVLVYQDNPTSEG 519
           NQYR S++WS V   +D PT  G
Sbjct: 46  NQYRISALWSMVSKMED-PTLSG 67


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 188 RVFRNKVPDCKWPGTNVFRNKPESAIRQKWTLVYKCCVTKQI 63
           R  RNK  + KW   +  +  P SAI Q  T      +T+ I
Sbjct: 290 RYLRNKTRNMKWHTIHERQRNPRSAIYQACTDSVSLLITEPI 331


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 152 PGTNVFRNKPESAIRQKWTLVYKCCVTKQISG 57
           P +N  +N    A+ + W+ + +CC+    SG
Sbjct: 162 PSSNSLQNNKALALIEAWSFLGECCIHGTPSG 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,607
Number of Sequences: 5004
Number of extensions: 61062
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)