Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0849
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1066 + 9431790-9431872,9432333-9432400,9433174-9433314,943...    29   3.0  
05_05_0235 + 23510747-23510843,23511719-23511863,23512398-235124...    27   9.0  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    27   9.0  

>07_01_1066 +
           9431790-9431872,9432333-9432400,9433174-9433314,
           9434186-9434227,9435915-9436000,9436453-9436515
          Length = 160

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 256 LGFPATLCRDWKSATSDCQFQVHGYLGIRCRIANGRGQMYLETN 125
           L    T+   W   +SDC   + G + +R  +A G G   +ET+
Sbjct: 115 LQISVTMTSSWLCISSDCLHSLDGIMVVRATLAVGGGVTKMETS 158


>05_05_0235 +
           23510747-23510843,23511719-23511863,23512398-23512469,
           23512726-23512797,23512932-23513075,23513161-23513232,
           23513330-23513401,23513499-23513573,23513657-23513725,
           23514109-23514177,23514295-23514316,23515612-23515663,
           23515883-23516133,23516212-23516346,23516615-23516968,
           23517155-23517181,23517232-23517390
          Length = 628

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 178 GIRCRIANG--RGQMYLETNQSPPFAKNGP*YISVVLPNKLVANV 50
           G+R  IA G  +G +YL T+  PP         +++L +K VA V
Sbjct: 330 GLRLHIALGASKGILYLHTDADPPIFHRDVKASNILLDSKYVAKV 374


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 175 IRCRIANGRGQMYLETNQSPPFAKNGP*YISVVLPNKLVANV 50
           +R  + + RG +YL T   PP         +++L +K VA V
Sbjct: 767 LRIALGSSRGILYLHTEADPPIFHRDIKASNILLDSKFVAKV 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,169
Number of Sequences: 37544
Number of extensions: 396477
Number of successful extensions: 898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)