Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0849
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25359| Best HMM Match : p450 (HMM E-Value=0) 31 0.57
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 29 4.0
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.0
SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27) 28 7.0
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 28 7.0
SB_14539| Best HMM Match : Ten_N (HMM E-Value=1.9) 28 7.0
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_11616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22) 27 9.2
>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
Length = 1084
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 96 GPFLANGGLWFVSKYICPRPFAIRHLIPKYPCTWN*QSLVADFQSRHRVAGKPKG 260
G F +NG LW+ + + + ++ +Y T+N ++V DF +R P+G
Sbjct: 692 GVFFSNGNLWYKHRRAISKKLLVPRMVEQYVPTYN--AIVDDFLARLSFIKGPEG 744
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 142 FVPGHLQSGTLFLNTRVLGIDSHWWPT-SNLGTESPGSLKGCPLTLRKASTIGRDCNHK 315
F+P + + +L L RV+G S W PT + S L C L + RD K
Sbjct: 315 FLPSEIAAASLSLAMRVMGKGSEWTPTLEHYSGYSEKKLSTCMQRLAQLVLGARDSKQK 373
>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1792
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 58 PLICLVTQHLYTRVH--FWRMADSGLFLN 138
PLIC+V HLY R H RM + + LN
Sbjct: 238 PLICVVNTHLYYRPHSPHIRMLQAAIILN 266
>SB_53777| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 364
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 259 PLGFPATLCRDWKSATSDCQFQVHGYLG 176
P A++ RDW +S C Q+HG+LG
Sbjct: 78 PFSLIASISRDWVLGSSFC--QLHGFLG 103
>SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)
Length = 745
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 376 AGQVDPSIYSVSCFILPENTYKQMISLN 459
A VDP++ +S FI EN YK+ N
Sbjct: 540 AKAVDPNVKDLSVFINKENVYKRFFKAN 567
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 154 HLQSGTLFLNTRVLGIDSHWWPTSNLGTESPGSLKGCPLTL 276
H SG LF++ + ++ +SNL SPG++ G PL L
Sbjct: 1319 HKCSGKLFVDIDAFYV--YYLKSSNLSPGSPGNMWGAPLVL 1357
>SB_14539| Best HMM Match : Ten_N (HMM E-Value=1.9)
Length = 493
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 352 VDQLIINREFRFIYGCSHVRSWRLYAESVG 263
V IIN E R + G H+R RL A +VG
Sbjct: 107 VSDYIINNELRTLCGSLHLRCGRLMALAVG 136
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -3
Query: 307 CSHVRSWRLYAESVGNP---LGFPATLCRDW-KSATSDCQFQVHGYLGIRCRIANG--RG 146
C H+R+ YAESV L FP T D+ + DC+ + +G G G
Sbjct: 790 CDHMRAPEYYAESVTTTCPMLAFPCTSMDDFERGYCFDCENRPCPSVGYNAGKRKGVATG 849
Query: 145 QMYLETNQSPPF 110
+ + TN PF
Sbjct: 850 KHFSLTNADKPF 861
>SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 596 TSANQYRRSSIWSTVLVYQDNPTSEGWRKLRQNILTHA*LST 471
T+++ YR+S T L+ EGW+K R N L+ + LST
Sbjct: 187 TNSSAYRKSHSCETTLIN----LIEGWKKARDNKLSVSILST 224
>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 596 TSANQYRRSSIWSTVLVYQDNPTSEGWRKLRQNILTHA*LST 471
T+++ YR+S T L+ EGW+K R N L+ + LST
Sbjct: 390 TNSSAYRKSHSCETTLIN----LIEGWKKARDNKLSVSILST 427
>SB_11616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -3
Query: 307 CSHVRSWRLYAESVGNP---LGFPATLCRDW-KSATSDCQFQVHGYLGIRCRIANG--RG 146
C H+R+ YAESV L FP T D+ + DC+ + +G G G
Sbjct: 8 CDHMRAPEYYAESVTTTCPMLAFPCTSMDDFERGYCFDCENRPCPSVGYNAGKRKGVATG 67
Query: 145 QMYLETNQSPPF 110
+ + TN PF
Sbjct: 68 KHFSLTNADKPF 79
>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
Length = 884
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 596 TSANQYRRSSIWSTVLVYQDNPTSEGWRKLRQNILTHA*LST 471
T+++ YR+S T L+ EGW+K R N L+ + LST
Sbjct: 250 TNSSAYRKSHSCETTLIN----LIEGWKKARDNKLSVSILST 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,453,603
Number of Sequences: 59808
Number of extensions: 472448
Number of successful extensions: 1063
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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