Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0849
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 533 PTSEGWRKLR 504
           P S GWRKLR
Sbjct: 214 PKSSGWRKLR 223


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 162 IRHLIPKYPCTW 197
           IR +I  YPC W
Sbjct: 479 IRDMIGYYPCCW 490


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 162 IRHLIPKYPCTW 197
           IR +I  YPC W
Sbjct: 532 IRDMIGYYPCCW 543


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 356 NPGKWIQPGKWIPVY 400
           NP   +QPG+ +P++
Sbjct: 209 NPSSGLQPGEGLPMW 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,118
Number of Sequences: 438
Number of extensions: 4779
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)