Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0849
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29990.1 68417.m04266 light repressible receptor protein kina...    27   10.0 
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    27   10.0 
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    27   10.0 
At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put...    27   10.0 

>At4g29990.1 68417.m04266 light repressible receptor protein kinase
           identical to light repressible receptor protein kinase
           [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 876

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 358 SWQVDPAGQVDPSIYSVSCFILPENTYKQMISLN 459
           +WQ DP   VD S   + C     NT  + I+LN
Sbjct: 382 NWQGDPCVPVDNSWEGLECLHSDNNTSPKSIALN 415


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 400 YSVSCFILPENTYKQMISL 456
           Y+++CF+LP+   KQ+IS+
Sbjct: 6   YTMACFLLPKTVCKQIISV 24


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 473 CSIMRVLICFVVTFASLQTLDCLDTRALYSR 565
           CS + V++ FV TF +L   D +    L+SR
Sbjct: 26  CSFLFVIVLFVATFYTLHHPDAVTPPLLFSR 56


>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 886

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 358 SWQVDPAGQVDPSIYSVSCFILPENTYKQMISLN 459
           SWQ DP   +  S   VSC ++  +T  ++ISL+
Sbjct: 385 SWQGDPCVPIQFSWMGVSCNVIDISTPPRIISLD 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,234
Number of Sequences: 28952
Number of extensions: 319016
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)