Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0848
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    30   0.27 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   0.48 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   3.4  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    26   4.5  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 461 RDCNEQSVANLFNAHWHIVILNEESSCFVLDRLHE 357
           R+ N Q++ N F+A WH+++    S     DR HE
Sbjct: 716 REFNRQTLRNAFDA-WHLLMFRVTSLVMQADRFHE 749


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 481 GIPYLRLGTVMNNLSPTFSTPIGTLLY*TKNLPVSFSTGFTN 356
           G P+ +   V NN S TF   + T L+ +KN   SF+  F+N
Sbjct: 112 GSPFYKNPVVANNPSSTFD--MSTNLFNSKNANTSFTNAFSN 151


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 393 FVQYNNVPMGVEKVGDRLF 449
           F QYNNVP+G++ V + ++
Sbjct: 272 FEQYNNVPLGIKGVIEAIY 290


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 122 TGSSDGEQ-QKQQENLHFDDRLITNLIL 42
           + SSD EQ +KQ +++H D+  + +LIL
Sbjct: 14  SSSSDAEQWEKQTKSVHIDNSDVNSLIL 41


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 217  DSLLTLTEGGDKLTADSDKTIGISYQIAEIYPSGRVGIYSDPKS*DHS*SLSRTKQEDSS 396
            ++L T  +  D+     D+TIGI+ ++ E   S        PK+   S +++R  Q+  +
Sbjct: 851  NTLETKLQSDDRGLLSKDQTIGIAKKLPESNISTSNHFLLPPKAISASKAINRNAQKSQN 910

Query: 397  FN 402
             N
Sbjct: 911  LN 912


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 384 LFRSRQASRMVSRFRV*IDSNSA*GVDLRDLIADSDCLV 268
           LFR    + +++RFR  +D      VDL ++  +S  LV
Sbjct: 630 LFRDMWFTLVINRFRYSVDLGETLEVDLENIAKNSPLLV 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,910
Number of Sequences: 5004
Number of extensions: 39639
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)