Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0844
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)                      156   1e-38
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)                       156   1e-38
SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3)                31   0.92 
SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)              29   3.7  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       28   6.5  
SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7)                      28   6.5  
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  156 bits (378), Expect = 1e-38
 Identities = 68/129 (52%), Positives = 90/129 (69%)
 Frame = +3

Query: 150 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRNKWLSR 329
           +WNL++++T L+ ++ + V G  HIG +ML L E  G +   DWSDH LWWP R +WL +
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGLWWPQRRQWLLK 66

Query: 330 PKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNLGIRH 509
           P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +DFS   F AV +LC  LGIRH
Sbjct: 67  PRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSMDFSKKVFVAVQELCAELGIRH 126

Query: 510 SEELSLCYP 536
            EELSL  P
Sbjct: 127 PEELSLMKP 135


>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  156 bits (378), Expect = 1e-38
 Identities = 68/129 (52%), Positives = 90/129 (69%)
 Frame = +3

Query: 150 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRNKWLSR 329
           +WNL++++T L+ ++ + V G  HIG +ML L E  G +   DWSDH LWWP R +WL +
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGLWWPQRRQWLLK 66

Query: 330 PKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNLGIRH 509
           P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +DFS   F AV +LC  LGIRH
Sbjct: 67  PRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSMDFSKKVFVAVQELCAELGIRH 126

Query: 510 SEELSLCYP 536
            EELSL  P
Sbjct: 127 PEELSLMKP 135


>SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3)
          Length = 404

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 22/91 (24%), Positives = 42/91 (46%)
 Frame = +3

Query: 177 DLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRNKWLSRPKHTLDQYG 356
           +LN  R   ++ D +     ++   ++ KE ++ +   ALW+      +   K T+  +G
Sbjct: 205 ELNN-RPFTLQSDSYAYRAYIESLFNYSKEAQESYLTGALWYKDTAGHMES-KRTI--FG 260

Query: 357 VHADAALHFTPMHKPLRIQLPDLRFIDCKID 449
           +  DAA +      P   Q+P L  I+ K+D
Sbjct: 261 IVEDAAYNGHYKKIPFNFQMPHLNSIEVKVD 291


>SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)
          Length = 241

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 126 DGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDH 290
           DGEI G G      + +  NE     VKG++H  GVM K  +  G +++ +W ++
Sbjct: 13  DGEIQGHG---FRYWASSRNEYTGQFVKGELHGNGVM-KYGD--GSQYEGEWMNN 61


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
 Frame = +3

Query: 240 KLTESFGKEFKKDWSDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLR--IQ 413
           +L + F + FK  W   + W    + W++ P  T+D   +  +    F  + K  +   +
Sbjct: 111 RLIKEF-EPFKNMWLTASDWQKWHDSWMNDPLTTIDAEQLEQNVNNSFKTIFKCYKHFKE 169

Query: 414 LPDLRFIDCKIDFSIDTFS---AVIQLCKNLGI--RHSEELS--LCYPLEAS 548
           +P  + +  ++   I+ F     +IQ  +N G+  RH E+LS  L +P+ A+
Sbjct: 170 IPACQQVAYEVREKIEAFKPYIPLIQGLRNPGMRSRHWEQLSKELGFPVVAN 221


>SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7)
          Length = 368

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 250 RALVKSSRKIGRTMPS-GGRLETNGSPDQNTPWTSTEFTRTPPYTSRPCTNH*ESSCRT* 426
           R + +      +T P+   R  +   PDQN PW+       P  TS P       S RT 
Sbjct: 65  RKVAREGPSQSKTSPTLTTRSNSTTRPDQNNPWSRCGLLSCPTTTS-PAKRRKTPSWRTL 123

Query: 427 DSSTAKLTSQL 459
             + + L +QL
Sbjct: 124 APALSPLATQL 134


>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 340 PWTSTEF-TRTPPYTSRPCT 396
           PW++    TR PP ++RPCT
Sbjct: 879 PWSNRHLDTRAPPISARPCT 898


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,633
Number of Sequences: 59808
Number of extensions: 371156
Number of successful extensions: 1507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)