Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0843
         (512 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.7  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   4.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.5  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 487 SDRSTVYRVPTRQAGSGPAGYSGTPAAPSGRP 392
           SDR +  R P  +    P    G P A   RP
Sbjct: 200 SDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRP 231


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 507 RCRGVIRATGRRCIASRPGRLVLVQ 433
           +CR   R TG   +++  GRLV+ +
Sbjct: 200 QCRTKHRLTGETRLSATKGRLVITE 224


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 415 PAAPSGRPDGLPYR 374
           PAAP+ R +G P R
Sbjct: 344 PAAPANRGNGFPKR 357


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 451 AGSGRDTPSTGRSNHSTA 504
           +GSG + P  G S+H +A
Sbjct: 529 SGSGNNQPPGGPSSHVSA 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,586
Number of Sequences: 336
Number of extensions: 2570
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)