Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0843
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   1.6  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   2.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   5.0  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   6.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   8.8  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 344 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 466
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 478 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 344
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 400 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 501
           QT P++  N P+  N PA +  +TP+   +   T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 445 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 362
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 185 RTHPLNDSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDG 301
           R  P+   P +L      L G+N+ E+  L    L P G
Sbjct: 153 RNVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGG 191


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 445 GSGPAGYSGTPAAPSGRPDG 386
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 200 NDSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKD 319
           + SPAL+  T + L+    D +GG+       D + H  D
Sbjct: 100 DSSPALIDKTLEWLKEHQDDVLGGIDFILWTGDNSRHDND 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,597
Number of Sequences: 5004
Number of extensions: 39591
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)