Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0843
(512 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 31 0.74
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 1.7
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 2.2
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 3.0
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 29 3.0
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 3.9
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 3.9
SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 3.9
SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 3.9
SB_1963| Best HMM Match : rve (HMM E-Value=0.022) 28 5.2
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 6.9
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_34755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 27 9.1
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 27 9.1
SB_31849| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31574| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4) 27 9.1
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 35.5 bits (78), Expect = 0.026
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVG--GLPRSTLQPDGAAHPKDAQPTEPS 340
R P +HP P HP P G V G P + P GA HPK P P
Sbjct: 550 RVPPPGASHPRVPPPGAPHPRVPP-PGAPHPRVPPPGTPHPRVPPPGAPHPKVPPPGAPY 608
Query: 341 RRIEGSETSAVSVRQPVGPPRRCRWCPGIP 430
+R+ S + P GPP + PG P
Sbjct: 609 QRLPYSGAYHPRL-PPPGPPYQRVPPPGAP 637
Score = 34.7 bits (76), Expect = 0.045
Identities = 29/98 (29%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQD-EVGGLPRSTLQPDGAAHPKDAQPTEPSR 343
R P +HP P HP P +Q G P + P GA HP+ P P
Sbjct: 390 RVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPHP 449
Query: 344 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
R+ V P P R PG P R PG
Sbjct: 450 RVPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVPPPG 485
Score = 32.7 bits (71), Expect = 0.18
Identities = 31/99 (31%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQDEV--GGLPRSTLQPDGAAHPKDAQPTEPS 340
R P THP SP HP P G V G ++P GA HP+ P P
Sbjct: 380 RMPPPGATHPRVPSPGASHPRVPP-PGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPH 438
Query: 341 RRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
R V P P R PG P R PG
Sbjct: 439 PRFPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVPPPG 475
Score = 32.3 bits (70), Expect = 0.24
Identities = 30/99 (30%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVG--GLPRSTLQPDGAAHPKDAQPTEPS 340
R P HP P HP P G V G P + P GA HP+ P P
Sbjct: 440 RFPPPGAPHPRVPPPGAPHPRVPP-PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPH 498
Query: 341 RRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
+R+ V P P R PG P R PG
Sbjct: 499 QRVPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVPPPG 535
Score = 31.5 bits (68), Expect = 0.42
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Frame = +2
Query: 191 HPLNDSPALLHPTSDPLRGQNQDEVG--GLPRSTLQPDGAAHPKDAQPTEPSRRIEGSET 364
HP P HP P G V G P + P GA HP+ P P R+
Sbjct: 428 HPRVPPPGAPHPRFPP-PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGA 486
Query: 365 SAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
V P P +R PG P R PG
Sbjct: 487 PHPRVPPPGAPHQRVP-PPGAPH-PRVPPPG 515
Score = 31.5 bits (68), Expect = 0.42
Identities = 30/99 (30%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVG--GLPRSTLQPDGAAHPKDAQPTEPS 340
R P HP P HP P G V G P + P GA HP+ P P
Sbjct: 460 RVPPPGAPHPRVPPPGAPHPRVPP-PGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPH 518
Query: 341 RRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
R+ V P P R PG P R PG
Sbjct: 519 PRVPPPGAPHPRVPPPGAPHPRVP-PPGAPH-PRVPPPG 555
Score = 30.3 bits (65), Expect = 0.97
Identities = 29/97 (29%), Positives = 32/97 (32%)
Frame = +2
Query: 167 RGPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR 346
R P HP P HP P G P + P GA HP+ P P R
Sbjct: 500 RVPPPGAPHPRVPPPGAPHPRVPP---------PGAPHPRVPPPGAPHPRVPPPGAPHPR 550
Query: 347 IEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPG 457
+ S V P P R PG P R PG
Sbjct: 551 VPPPGASHPRVPPPGAPHPRVP-PPGAPH-PRVPPPG 585
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 297 SGCSVDRGSPPTSSWF*PRRGSDVGCKSAGESFSGWVLKSLGPRSAHNTMQTVESHIP 124
+ C+VDR P T++W + D SA +F G + LG N M TV+ + P
Sbjct: 300 NSCAVDRYDPRTNTWCSVAQVPDKTIASAAVAFEGKIY-VLGGSDGFNAMSTVQRYNP 356
>SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 319 RPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGS 459
+ AD N +L NVG+L + A Q+ L ++ +DQNQ AGS
Sbjct: 207 KAADCRCSKNHQLKNVGKLDISRSAANQSKHLEKQSLQVDQNQRAGS 253
>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 622
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 460 PTRQAGSGPAGYSGTPAAPSGRPDG 386
P +Q P GY G P+AP G P G
Sbjct: 429 PPQQPSYPPGGYGGPPSAPYGAPPG 453
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 232 RSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 333
R PPR P GRGA RG P+G P G
Sbjct: 76 RGPPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPG 109
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 170 GPKDFRTHPLNDSPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEP 337
GP P S HPTS+P + G P +T P G HP + +EP
Sbjct: 44 GPDHSGGIPTAGSSITNHPTSEP---NATNHPTGEPNATNHPTGEPHPSNHPTSEP 96
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 439 GPAGYSGTPAAPSGRPDGLPYRDGRR 362
G GY G PA P GR DG+P GR+
Sbjct: 1853 GWKGYPGNPAGPPGR-DGIPGPPGRQ 1877
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 251 NQDEVGGLPRSTLQP--DGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCR 412
N +V + + + P DG P QPT+ I+ T + P GPP C+
Sbjct: 53 NNSKVKPVVGAAINPSADGITSPNHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQ 108
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 29.1 bits (62), Expect = 2.2
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 232 RSPPRSEPG*GRGATAVNTTT-RRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQT 405
R+PP P +T T RRR + R + + RR + +GR+ T + +
Sbjct: 324 RTPPSFTPRSSISRRRSDTPTKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRR 383
Query: 406 VPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 501
V L+ T PAGS R + S+ S ST
Sbjct: 384 VNLLEAFTAAAAGTPAGSRRSSSSSRSSLPST 415
>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2235
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 310 PQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTG 483
P RP G EA RRL R+ A + A + V ++P G D PS G
Sbjct: 1858 PATRPHPGRVEAGRRLAKWNRINRAKKEALRVVSAQQLPVAPGPSEPQGLRSDDAPSAG 1916
>SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 436 PAGYSGTPAAPSGRPDGLPYRDGR 365
P G+SG PAAP+ PD L Y D +
Sbjct: 264 PGGHSGAPAAPAIGPDSL-YGDNK 286
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 289 TTRRRGSPQGRPADGAFEANRRL*N-VGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGR 465
T RRR + R + + RR + +GR+ T + + V L+ T PAGS R
Sbjct: 631 TKRRRMHREHRSGERVLLSRRRPASAMGRITTKKKTPPRRVNLLEAFTAAAAGTPAGSRR 690
Query: 466 DTPSTGRSN 492
+ S+ RS+
Sbjct: 691 RSSSSSRSS 699
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 248 QNQDEVGGLPRSTLQPDGAAHPKD---AQPTEPSRRIEGSETSAVSVRQPVGP 397
Q+QD+ PR + P+D A+P +P R+ + S+TS +Q P
Sbjct: 196 QDQDKQAARPREASHKTKRSKPQDKQAARPKQPRRKTKKSKTSKPQDKQAARP 248
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 224 PTSDPLRGQNQ-DEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSE 361
PT D L N+ DE +P+G +P D+Q +EP+ + + SE
Sbjct: 220 PTPDQLVDANKPDEETSQVSGKEKPEGQENPVDSQLSEPAEQAQESE 266
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 460 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 368
P G G G G PA P G P+GLP +G
Sbjct: 239 PGNPGGPGYQGNHGNPAGPQG-PNGLPGPNG 268
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 405 RLGGPT---GCRTETADVSEPSIRLEGSVGWASLG*AAPSGCSVDRGSPPTSS 256
++GG T G +ET+D S+PS+ ++G+ + + P + SP +S
Sbjct: 2014 KIGGATIKFGVSSETSDASKPSVADAAALGFLKVPASTPPDTTPSASSPADTS 2066
>SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 436 PAGYSGTPAAPSGRPDGLPYRDGR 365
P G+SGTPAAP+ P+ Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354
>SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 436 PAGYSGTPAAPSGRPDGLPYRDGR 365
P G+SG PAAP+ P+ L Y D +
Sbjct: 210 PGGHSGAPAAPAVNPESL-YGDNK 232
>SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 436 PAGYSGTPAAPSGRPDGLPYRDGR 365
P G+SGTPAAP+ P+ Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354
>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
Length = 931
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 221 HPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPP 400
HP +P R + ++GG P + L+P + P+D + T R + S V+ V P
Sbjct: 440 HP--EPRRIASTFKIGGEP-THLEPSSSMKPQDHERTRKPLRSPRRQLSDVATEAKVAEP 496
Query: 401 R 403
R
Sbjct: 497 R 497
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 281 STLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQP 388
S +P AHP+ + PTEP++R+ A S R+P
Sbjct: 57 SDTEPTHRAHPQ-SPPTEPTQRLPRDGHPAPSKRRP 91
>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 2352
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 442 SGPAGYSGTPAAPSGRPDGLPYRDGR 365
S P G+SG PAAP+ P+ Y D +
Sbjct: 1621 SSPGGHSGAPAAPAVGPESF-YGDNK 1645
>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 206 SPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQ 385
SP P R Q + PRS++ + PK + SRR GS ++ ++
Sbjct: 100 SPLAASPPVSTPRQQRRTPSSFTPRSSISRRRSDTPKKRRRISVSRRRAGSALGRLTTKK 159
Query: 386 PVGPPRR 406
PPRR
Sbjct: 160 KT-PPRR 165
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 442 SGPAGYSGTPAAPSGRPDGLPYRDGR 365
S P G+SG PAAP+ P+ Y D +
Sbjct: 311 SSPGGHSGAPAAPAIGPESF-YGDNK 335
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/67 (28%), Positives = 27/67 (40%)
Frame = +2
Query: 206 SPALLHPTSDPLRGQNQDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQ 385
SP L P R Q PRS++ + PK+ + RR GS ++ +
Sbjct: 100 SPLALSPPVSTPRQQRHTPPSFTPRSSISRRRSDTPKNRRRISVPRRRAGSALGRLTTNK 159
Query: 386 PVGPPRR 406
PPRR
Sbjct: 160 KT-PPRR 165
>SB_34755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 84 PNLLRGPRAKGARGVCETQRSAWCCE-QTAGP 176
PN + A+G RG+C+ C E +TA P
Sbjct: 61 PNTIGCSSARGPRGICDVNPLVQCAEPKTASP 92
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 190 PPTKRLPCTLTPDVRSPPRSEPG*GRGATAVNTTT 294
PPTK P T TP + P S+P T TT
Sbjct: 378 PPTKAKPPTTTPSKATAPISDPMTTTTPTTTKATT 412
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 305 AHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPR 403
A + PTEP R E S + PV PPR
Sbjct: 248 AQSTPSTPTEPPRPAEPPRPSPAATAHPVMPPR 280
>SB_31849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 275 PRSTL-QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSL 451
PR T +PD A+P P + ET S R P G + IP WT
Sbjct: 38 PRGTAPEPDPPVDSARARPPFPPWTVPEQETPVDSARSPRGQSQ-------IPLWTEPDP 90
Query: 452 PGRDAIHRRP 481
P A R P
Sbjct: 91 PVDSARARNP 100
>SB_31574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 469 YRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 365
+R R+ P GYSG PA P+ P+ Y D +
Sbjct: 257 WREAKRRFVRPPGGYSGAPAVPAVSPESF-YGDNK 290
>SB_31312| Best HMM Match : DUF740 (HMM E-Value=1.4)
Length = 1209
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 237 GSDVGCKSAGESFSGWVLKSLGP-RSAHNTMQTVESHIPRAPLLRGDLVG 91
G D+G K +G S +G S G H+++ TVE I +APL D G
Sbjct: 486 GDDLGEKRSGSSLTG----SEGSIDELHSSVSTVEDTIRKAPLGTSDARG 531
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,130
Number of Sequences: 59808
Number of extensions: 389569
Number of successful extensions: 1515
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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